Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq96 114 4e-20 seq114 104 7e-17 seq101 104 7e-17 seq70 100 9e-16 seq67 96.9 1e-14 >seq96 Length=2270354 Score = 114 bits (126), Expect = 4e-20 Identities = 702/1125 (62%), Gaps = 2/1125 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||||| || || ||| | | | || |||||||| | ||||| || || | Sbjct 1809595 CCCGAGGAAATCTCGTCCATGATCCTGCTCAAGATGAAGGAGACCGCTGAGGCCTACCTG 1809654 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || || | | || || | ||||| || ||||| || || ||| | ||||| Sbjct 1809655 GGCACGACCGTCTCCAACGCCGTCGTCACTGTCCCCGCCTACTTCAACGATTCGCAGCGA 1809714 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || ||| |||| | || || || | || ||||| || Sbjct 1809715 CAAGCCACCAAGGATGCCGGTGTCATCTCGGGCCTCAACGTCCTCCGTATTATTAACGAG 1809774 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||||||||| || || || || || || || || | || | || || || | Sbjct 1809775 CCCACTGCTGCCGCCATCGCTTACGGCCTCGACAAGAAGACCGTTGGCGAGAAGAACGTC 1809834 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | || || || || || ||||| || || | || |||| ||||| Sbjct 1809835 CTCATCTTCGATCTCGGAGGAGGAACGTTCGATGTCTCCCTTTTGACCATTGAGGAGGGT 1809894 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || ||||| || || | || || || || || || || Sbjct 1809895 ATCTTCGAGGTCAAGGCCACCGCCGGTGACACCCACTTGGGAGGTGAGGACTTCGACAAC 1809954 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 || ||||| | || || || || || ||||| |||| || | ||| | Sbjct 1809955 CGACTCGTCACTCACTTCGTCGCCGAGTTCAAGCG-CAAGAACAAGAAAGATCTCTCGTC 1810013 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || | | || | ||||| || | ||||| || || ||||| ||||| || | || Sbjct 1810014 CAACGCCCGTGCTCTCCGTCGTCTCCGCACTGCCTGCGAGCGTGCCAAGCGAACCCTCTC 1810073 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | |||| || | || || || || || || || || | || |||| | Sbjct 1810074 TTCCGCCGCCCAGACTACCATCGAGATCGACTCGCTCTTCGAGGGTATCGACTTCTACAC 1810133 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || |||||||| || || || || || || | || | | || ||||| Sbjct 1810134 CTCCATCACTCGTGCTCGCTTCGAGGAGTTGTGCCAAGACTTGTTCCGTGGCACCATGGA 1810193 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 || || || || || | ||| | || || ||| | | | || | || Sbjct 1810194 CCCCGTCGAGAAGGTCCTTCGCGATTCCAAGATCGACAAGGCTTCCGTCCACGAGATCGT 1810253 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | |||||||| || || ||||| || || || || | | | || || | || || Sbjct 1810254 CCTCGTTGGTGGCTCCACTCGTATCCCCAAGGTCCAGAAACTCGTCTCGGACTACTTCAA 1810313 Query 350251 TGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGT 350310 ||||| || ||| | || || || || ||||| || ||||| || ||||| ||||| Sbjct 1810314 CGGCAAGGAGCCTAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCCGCTGT 1810373 Query 350311 TCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGA 350370 ||||| | || | |||| | | | | || | | || | | | || || Sbjct 1810374 CCAGGCCGCCATCCTCACTGGTGACACGTCTGAGAAGACCCAGGACTTGCTCTTGCTCGA 1810433 Query 350371 TGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCC 350430 ||| | || |||||| || | || || | |||| || ||||| || || || Sbjct 1810434 TGTCGCCCCGCTTTCGACCGGTATCGAGACCGCCGGTGGTGTCATGACCAAGCTCATCCC 1810493 Query 350431 TAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCA 350490 | || | || || || || || |||||| | || || || || | || || || || Sbjct 1810494 CCGCAACACGACCGTCCCCACCAAGAAGTCCGAGACCTTCTCGACCTACGCCGACAACCA 1810553 Query 350491 GCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAA 350550 ||| | || || || || | || ||||| ||||| ||||| || ||||| || Sbjct 1810554 GCCCGGTGTCTTGATCCAGGTCTACGAGGGTGAGCGTGCCCGCACAAAGGATAACAACCT 1810613 Query 350551 ACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGA 350610 || || | || || || || || || || | || ||||| ||| | || Sbjct 1810614 CCTCGGCAAGTTCGAGCTCTCTGGCATCCCCCCCGCCCCCCGTGGTGTTCCGCAGGTCGA 1810673 Query 350611 AGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGC 350655 |||| | ||||| |||||| | || |||||| | || || |||| Sbjct 1810674 AGTCACCTTCGACATTGATGCCAACGGTATTCTCAACGTCTCCGC 1810718 >seq114 Length=793728 Score = 104 bits (114), Expect = 7e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || | || || || ||||| || || ||||| | Sbjct 567961 TTTGCATACCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGT 567902 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || ||||||||||| | || || || | Sbjct 567901 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGT 567842 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | ||| || || ||||||| || || | Sbjct 567841 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCAATCGTGTCCGAGG 567782 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 567781 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 567727 >seq101 Length=1000389 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| |||||||| || ||||| | Sbjct 688354 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAATCGGC 688413 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || || ||||| ||||||||||| || || || Sbjct 688414 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGG 688473 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || | || || || || |||| || || | || || Sbjct 688474 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 688533 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || ||||| || |||| Sbjct 688534 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 688580 >seq70 Length=566626 Score = 100 bits (110), Expect = 9e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || | || || || ||||| || || ||||| | Sbjct 51682 TTTGCATACCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGT 51623 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || ||||||||||| | || || || | Sbjct 51622 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGT 51563 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | ||| || || ||||||| || || | Sbjct 51562 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCAATCGTGTCCGAGG 51503 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || || ||||| Sbjct 51502 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51448 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || || || | | || || ||||| || | Sbjct 52110 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGA 52052 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | || || || || || ||||| || || || ||||| | Sbjct 52051 GCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTGGA 51992 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | ||| || || ||||||| || || | || || || || || | ||||| | Sbjct 51991 TCTTGGTTTTGACGTTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGC 51932 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || || || ||||| Sbjct 51931 CGGTCAGGGTCTTGACGAAGATTTGCAT 51904 >seq67 Length=473732 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 || ||||| || | | || || | ||| || || ||||| ||||| || || || || Sbjct 308835 ATGCCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCG 308894 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | || || || ||||| || || || || || || ||||| ||||||||||| || || Sbjct 308895 GCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGC 308954 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || ||||| || || || || || | || || || || |||| || || | || Sbjct 308955 GGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 309014 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || || | ||||| || || || || || ||||| || ||| Sbjct 309015 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 309062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251177243298