Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq79 322 5e-83 seq98 138 1e-27 >seq79 Length=767515 Score = 322 bits (356), Expect = 5e-83 Identities = 532/765 (70%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || || ||||| ||||| | ||| ||| || ||||| Sbjct 3429 TCATGCGTGTCGCCGTCGGCATTCACGGGCACGACATCGAGCGCGTCTTGCAGTCGTACA 3488 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | ||||||||| |||||| |||| || || |||||||| || ||| Sbjct 3489 ACCTCATGTCCGAGCGGTACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 3548 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| || ||| |||| ||||||||||||| |||||||| |||| Sbjct 3549 CTCACCCGCAGCTTTCGTCGTGTTTCTTGGTCACGATGAAGGATGATTCGATCGAAGGCA 3608 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 3609 TCTACGACACGCTCAAGACGTGCGCTCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 3668 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | || || ||||||||| | | | | Sbjct 3669 GCATCCACAACATCCGCGCGACCGGCTCCTACATTGCCGGCACGAACGGCTACTCGAACG 3728 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| ||| ||||| || || |||||| |||| ||||| Sbjct 3729 GCATCGTCCCCATGCTCCGTGTCTACAATAACACCGCGCGCTACGTCGACCAAGGTGGCA 3788 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||| ||| | | |||| Sbjct 3789 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTCTTCGAGT 3848 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || ||| | Sbjct 3849 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTTTTGG 3908 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || ||||||||| | || ||| | || || ||| ||| Sbjct 3909 CGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGCGACTGGCCCCTCT 3968 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| |||||| ||||| | ||||| || || ||||| || | ||| Sbjct 3969 TCTGCCCCGCCGAAGCCCCCGGTCTCCACGAAGTCTATGGCGAAGAGTTCAAGGCCTTGT 4028 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||| ||| |||||||| | || |||| || | ||| Sbjct 4029 -TCGAGAAATACGAAAAGGAGGGTCGCGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGG 4087 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | ||||| ||| || |||||| || || || | || | |||| ||||||||| | Sbjct 4088 TACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCTCTACAAGGACGCC 4147 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| |||| ||||| |||||| | ||| ||||| ||| Sbjct 4148 GCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCG 4192 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || || || Sbjct 5144 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTC 5203 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || ||||| ||||| | ||| |||||||| || || || |||||| | || || || Sbjct 5204 GGCCGATCGAGGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 5263 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 5264 GACGATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGG 5323 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 ||||||||| |||| || |||||| Sbjct 5324 TATGTACTACTTGCGCACGCGCGCC 5348 >seq98 Length=574835 Score = 138 bits (152), Expect = 1e-27 Identities = 288/422 (68%), Gaps = 9/422 (2%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 431422 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACC 431363 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | |||||| ||||| | | ||||| | ||| | ||||| | Sbjct 431362 AAGACGGCTCGATGCTTTGACCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 431303 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| |||||||||||| || ||| | Sbjct 431302 GATGGAAGACGCTACGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAACG--AGCCGAA 431247 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 431246 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 431187 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | ||| ||||| |||| |||| | Sbjct 431186 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATAATGGTGCCTTGCAAACTCATT 431127 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| || | ||| || |||| || | ||||| || Sbjct 431126 TCACCGTGATGGTACGCCGAGTGCTCAGCAACGTAACCGCCCAATTGTCCGACCTTGATC 431067 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| || ||||| || || | | |||||||| || ||| || ||| Sbjct 431066 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCTGGCTT-AAA 431008 Query 152290 CC 152291 || Sbjct 431007 CC 431006 Score = 114 bits (126), Expect = 1e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 431267 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 431208 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || | Sbjct 431207 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATA 431148 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 431147 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCAGCAACGTAACCG 431088 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 431087 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 431028 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| |||||| | ||||| Sbjct 431027 TTGCGTTGACCTGGCTTAAACCCATC 431002 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 429253 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 429194 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 429193 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 429144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214864526800