Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_028969.1 Length=52955 Score E Sequences producing significant alignments: (Bits) Value seq63 111 5e-20 >seq63 Length=35995 Score = 111 bits (122), Expect = 5e-20 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 10637 GGTCAGGAAGGACGTGCCTACGCCACGATTAACGGTCGTGTAGAGGAAATGTTTTGGCTT 10696 || ||||||| || | ||| | ||||||||||| | || |||||||||||| Sbjct 26265 GGGCAGGAAGCCCGCGGCTATACAACGATTAACGGCCAAGTGCAGGAAATGTTTTATGCC 26324 Query 10697 aaaaagttcgaagcaaaggtagaaaagaacaaaaaagaaggaaagaCACTAAACAGACGT 10756 |||| | || || | || || || |||||| || || | || | || Sbjct 26325 AAAACCCTTGAGGCGACGGCCGAGAAAAACAAAGCGGATTTCAAAGCGCTCGGAAAGCGC 26384 Query 10757 GGTACACAGCATAAGGCAATGGGATGGAAAGGTACGGGTAGCATGACTATTTACTATGTG 10816 ||||| ||| ||||| | || ||||| |||||||| || ||||||||||| |||| Sbjct 26385 GGTACGCAGAGCAAGGCTACCGGCTGGAAGGGTACGGGCAGTATGACTATTTATTATGCA 26444 Query 10817 ACCACCCTTTTCCGCCAACTTATGCTCGATTACATGAAGACAGGTAAAGACATTTACTTT 10876 || | |||| |||||| | ||||| ||||| || ||||| || || || | || ||| Sbjct 26445 ACGCCGATTTTTCGCCAAATGATGCTTGATTATATTAAGACCGGCAAGGATACCTATTTT 26504 Query 10877 GATGTTCAGATCACGAATGAAGACCCGACATCTAGTGTTGGAAAGCAAACTGTTGT 10932 ||||||||| | | || || || |||| || |||| |||||||| || || Sbjct 26505 GATGTTCAGGTGATCAACGAGGATCCGAGCAGTACGATTGGCAAGCAAACGGTGGT 26560 Score = 105 bits (116), Expect = 2e-18 Identities = 389/596 (65%), Gaps = 25/596 (4%) Strand=Plus/Plus Query 3323 CTAAACTGGGAGCGAGTGCCGTTCATCTGCTTCAAGTATAACGATGAAGAAATACCATTA 3382 || ||||||||||| |||||||||| ||||| || || ||||| || ||| || | Sbjct 18287 CTGAACTGGGAGCGCTTGCCGTTCATTTGCTTTAAATACAACGACGAGGAACAGCCGCTC 18346 Query 3383 ATCAAGTTTATTCAATCACTCATTGATGATTATGACTATCGTAAATCAGATAACGCTAAC 3442 || | | || || | || || || || ||| || || || ||| | ||| Sbjct 18347 ATTGATCTGGTTAAACGGCAGATCGACGACTACGACCGGAATATCTCGGACAACTCCAAC 18406 Query 3443 AACTTAGAGGATATGCCAAACAGCATTTATGTGTTAAGGGACTATGACGGTACCAATTTA 3502 ||||| ||||| |||| |||||| | || ||| | | ||||||||||| || || | Sbjct 18407 AACTTGGAGGACCTGCCGAACAGCTTATACGTGGTCAAAGACTATGACGGAACGAACGCA 18466 Query 3503 GGAGAGTTCCGATACAATCTAGCTGCTTATCGCGCTGTTAAAGTGGCGGGTGATGGTGGA 3562 | |||||||| | ||| | || || |||| | | || || || || Sbjct 18467 GCGGAGTTCCGCAAAAATTTGTCTATTTTCCGCGTCGCTTTCGTCAACGGGACCGGCGGG 18526 Query 3563 GTAGAAACCATTAGCTTGCCGATTGATACAGAGGCGTTTAAAACT---CATGTGGAG-AT 3618 | || || | | |||| || || || || || | | || ||| | ||| | Sbjct 18527 ATCGAGACGGTGAACTTGGAAATCGACACGGAAGC---TCACTCTTCCCATATTGAGCAA 18583 Query 3619 GAACAGAAAAGATATCTATGAGTTTGGGCGTGGCGTTGATACGCAGT--CTAGTAACTTT 3676 || ||| || || || ||||| || || || || ||||| ||| | || | | Sbjct 18584 CTACGGAAG-GACATTTACGAGTTCGGACGAGGAGTGGATACCCAGCGGCAAG--AGGTA 18640 Query 3677 GGAAATGATCCGTCAGGTATCGCA-TTAAAGTTTCTT-TATGCTGACCTGGATATGGATG 3734 || |||| | || || ||||| ||||| ||||| || || || ||||| ||||||| Sbjct 18641 GGCAATGCT---TCCGGCATCGCGCTTAAA--TTCTTATACGCCGATCTGGACATGGATG 18695 Query 3735 CCAACATGATTGAGACAGAGTTCCAAGCATCTATGGAGCATCTACGCTGGTTCATTGATC 3794 ||||| || ||| | ||||| || || ||||||| || | |||||| |||| | Sbjct 18696 CCAACGACATGGAGGCCGAGTTTCAGGCCAGCCTGGAGCAGCTGCTGTGGTTCGTTGACC 18755 Query 3795 AGCACATAGTTAATACTGGCGGCGGTGA--CTTCT-CTAACGAAACAGTTGAATTCATTT 3851 |||| || | || || ||||| || |||| || ||| || |||||||| | Sbjct 18756 AGCATATCGCCAACACGTCCGGCGTGGATTATTCTGATACCGA---TGTAGAATTCATCT 18812 Query 3852 TCAACAGAGACATTTTAATTAACGAAACGGATGCGATAACGAATGCAAAGGATAGT 3907 | ||| |||||||| | || || ||||| || ||| | |||| || ||||| ||| Sbjct 18813 TTAACCGAGACATTATCATCAATGAAACTGAAGCGGTGGCGAACGCCAAGGACAGT 18868 Score = 93.3 bits (102), Expect = 1e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 18519 CGTACAACAGAGTAAAGATTGTACAGGACAACaaaaaaaCAAAGAAACGAGACGTATACA 18578 |||| ||| | || ||| | || ||||||||||| || || ||||| || ||||| |||| Sbjct 31689 CGTATAACCGCGTCAAGCTGGTCCAGGACAACAAGAAGACCAAGAAGCGGGACGTGTACA 31748 Query 18579 TTGCCCAGGACTCAGTGAATATCGCCAAATGGGGGCGTTTGCAGTTGTTTGAAAAAGTAG 18638 ||| |||||| | |||||||||||||||||| ||||||| || | ||| || | Sbjct 31749 TTGAACAGGACAGCGCGAATATCGCCAAATGGGGCAAGTTGCAGTATTTCGTAAAGGTTG 31808 Query 18639 ACGAGGGCATGACGAAAGCACAAATCAAACAACT 18672 | || | || | |||| ||||| || || || Sbjct 31809 AGGACGACAAAAACGAAGCCCAAATTAAGCAGCT 31842 Score = 87.8 bits (96), Expect = 6e-13 Identities = 226/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 5365 GAGTTAAAAAAGAGTGTTGGTGACAACGAGGACTTGAAAAAGCAGATCGAGACACTACAA 5424 || || |||||| || || || || || | | |||||||| ||||| || || || Sbjct 20983 GATTTGAAAAAGTCTGCAGGCGATAATGAAGCTCTTAAAAAGCAAATCGAAACGCTTCAG 21042 Query 5425 AGTGATAACAAAGCTAAGGATGAACAGTATCAAACCAAGATTAAGGATATGCAGGTGTCT 5484 | || ||||| | | | || || || | | || | |||||| ||||| | || Sbjct 21043 GGCGAGAACAAGACAACTAAAGAGCAATACGAGGCAAAAGTGAAGGATCTGCAGCTCACT 21102 Query 5485 ACGGCTATCAAGCTAGCATTATCAGGAGAAGCACACGACCCTGATCTTATTGCTGACCTA 5544 || || | || || || | | || ||| || || || ||| | | || | || Sbjct 21103 ACAGCCGTTAAACTGGCTCTGGCCGGGCAAGTGCATGATCCGGATATCGTGGCGGGGCTT 21162 Query 5545 TTGGATAAATCGAAAATTGAGATCAATGAAGACGGCACATTAAAAGGCGGTTTGGATGAT 5604 |||| ||| | ||||| |||||| || |||||| | |||| |||| | || ||| Sbjct 21163 CTGGACAAAACCAAAATCGAGATCGGAGAGGACGGCGGCGTTAAAGCCGGTCTTGAAGAT 21222 Query 5605 CAAGTTAA-GGCGTTGCGTGAGAGCAAGGCTTTTTTGTTTGTCGAAAAACAGGAGGATCA 5663 ||| |||| ||| || || || ||||||| ||||||||| ||||||||||| | | Sbjct 21223 CAAATTAAAGGCCTT-CGCGAAAGCAAGGGCTTTTTGTTTACGGAAAAACAGGA-AACGA 21280 Query 5664 AG--GATTTCAGTTTAAAGGAGCACAACCTGCTGAAGG 5699 || | | | |||||||||||| ||||||| || || Sbjct 21281 AGCCGCCTGGA-TTTAAAGGAGCAAAACCTGCAGACGG 21317 Score = 84.2 bits (92), Expect = 7e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 16994 GTAGGAAAGATCAAGAATAAAGTAGATATCTCCAATGAAGACCTGAAAATGATGCGTGAA 17053 || ||||| ||| | ||| |||||||| ||| || || ||||| ||| ||||||| Sbjct 30179 GTCGGAAAAATCGAAGATACCGTAGATATTTCCTCCGAGGATCTGAAGATGCTGCGTGAC 30238 Query 17054 CTTGCTGAGATGAAGAATATCCAGAATTTCGTTACTCTGACACCTACCGTGCAGGTTCAG 17113 || || ||| ||| | || || || || |||||| |||| ||||||||||| || Sbjct 30239 CTGGCCGAGGCCAAGTACATTCAAAACTTTGTTACTTTGACTCCTACCGTGCATGTGACA 30298 Query 17114 ACAGGAGACATCAACAAAGGTGCTGACATTGATACG 17149 || || || ||||| || || | ||| | |||||| Sbjct 30299 ACGGGTGATATCAATAACGGAGTTGATTTGGATACG 30334 Score = 82.4 bits (90), Expect = 3e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 4277 GCGAAATGAAAGAGTTCAAAATGACGCTAGAAGAGTTTACAGCTAAAGCTAAGGGTAACT 4336 |||| | ||||||||||| |||||||| || ||||| || | || || |||| ||| Sbjct 19226 GCGAGCTCAAAGAGTTCAAGATGACGCTGGAGGAGTTCACGGAGAAGGCCAAGGACAACG 19285 Query 4337 TAGATGGTCGTTGGACCAAGGAACTAAACAACGTCTACTACAAAACTCGTGTAAGCCGTT 4396 || || || ||||| |||| | ||||||| ||| || || || ||| || ||||| Sbjct 19286 CTGACGGCCGCTGGACGCAGGAGTTGAACAACGCCTATTATAAGACCCGTATATCCCGTT 19345 Query 4397 TAGAGGCACT 4406 ||||||| || Sbjct 19346 TAGAGGCGCT 19355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169334066199564