Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_029104.1 Length=54312 Score E Sequences producing significant alignments: (Bits) Value seq63 141 3e-29 >seq63 Length=35995 Score = 141 bits (156), Expect = 3e-29 Identities = 240/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 5361 GATTTAAAAAATAGTGTTGGTGACAACGAGGACTTGAAGAAGCAAATCGAAACTCTTCAG 5420 ||||| ||||| || || || || || | | || |||||||||||||| |||||| Sbjct 20983 GATTTGAAAAAGTCTGCAGGCGATAATGAAGCTCTTAAAAAGCAAATCGAAACGCTTCAG 21042 Query 5421 AATGATAACAAAGCTAAGGATGAACAGTATCAAACCAAGATTAAGGATATGCAGATGTCT 5480 || ||||| | | | || || || | | || | |||||| ||||| | || Sbjct 21043 GGCGAGAACAAGACAACTAAAGAGCAATACGAGGCAAAAGTGAAGGATCTGCAGCTCACT 21102 Query 5481 ACAGCTATCAAGCTTGCTTTAGCAGGTGAAGCTCATGATCCTGATCTTATTGCTGGTCTC 5540 ||||| | || || ||| | || || ||| |||||||| ||| | | || || || Sbjct 21103 ACAGCCGTTAAACTGGCTCTGGCCGGGCAAGTGCATGATCCGGATATCGTGGCGGGGCTT 21162 Query 5541 CTAGACAAATCAAAAATCGAGATCAATGAGGACGGC-ACATTAACAGGTGGTCTTGATGA 5599 || |||||| | |||||||||||| ||||||||| | |||| || |||||||| || Sbjct 21163 CTGGACAAAACCAAAATCGAGATCGGAGAGGACGGCGGCGTTAA-AGCCGGTCTTGAAGA 21221 Query 5600 TCAAGTT-AAGGCGTTGCGTGAGAGCAAGGCTTTTTTGTTTGTCGAAAAACAGGAGGATA 5658 |||| || ||||| || || || ||||||| ||||||||| ||||||||||| | Sbjct 21222 TCAAATTAAAGGCCTT-CGCGAAAGCAAGGGCTTTTTGTTTACGGAAAAACAGGA-AACG 21279 Query 5659 AAG--GATTTCAGTTTAAAGGAGCACAACCTGCTGAAGG 5695 ||| | | | |||||||||||| ||||||| || || Sbjct 21280 AAGCCGCCTGGA-TTTAAAGGAGCAAAACCTGCAGACGG 21317 Score = 111 bits (122), Expect = 5e-20 Identities = 390/596 (65%), Gaps = 25/596 (4%) Strand=Plus/Plus Query 3323 CTAAACTGGGAGCGAGTGCCGTTCATCTGCTTCAAGTATAACGATGAAGAAATACCATTA 3382 || ||||||||||| |||||||||| ||||| || || ||||| || ||| || | Sbjct 18287 CTGAACTGGGAGCGCTTGCCGTTCATTTGCTTTAAATACAACGACGAGGAACAGCCGCTC 18346 Query 3383 ATCAAGTTTATTCAATCACTCATTGATGATTATGACTATCGTAAATCAGATAACGCTAAC 3442 || | | || || | || || || || ||| || || || ||| | ||| Sbjct 18347 ATTGATCTGGTTAAACGGCAGATCGACGACTACGACCGGAATATCTCGGACAACTCCAAC 18406 Query 3443 AACTTAGAGGATATGCCAAACAGCATTTATGTGTTAAGGGACTATGACGGTACCAATTTA 3502 ||||| ||||| |||| |||||| | || ||| | | ||||||||||| || || | Sbjct 18407 AACTTGGAGGACCTGCCGAACAGCTTATACGTGGTCAAAGACTATGACGGAACGAACGCA 18466 Query 3503 GGGGAGTTCCGATACAATCTAGCTGCTTATCGCGCTGTTAAAGTGGCGGGTGATGGTGGA 3562 | ||||||||| | ||| | || || |||| | | || || || || Sbjct 18467 GCGGAGTTCCGCAAAAATTTGTCTATTTTCCGCGTCGCTTTCGTCAACGGGACCGGCGGG 18526 Query 3563 GTAGAAACCATTAGCTTGCCGATTGATACAGAGGCGTTTAAAACT---CATGTGGAG-AT 3618 | || || | | |||| || || || || || | | || ||| | ||| | Sbjct 18527 ATCGAGACGGTGAACTTGGAAATCGACACGGAAGC---TCACTCTTCCCATATTGAGCAA 18583 Query 3619 GAACAGAAAAGATATCTATGAGTTTGGGCGTGGCGTTGATACGCAGT--CTAGTAACTTT 3676 || ||| || || || ||||| || || || || ||||| ||| | || | | Sbjct 18584 CTACGGAAG-GACATTTACGAGTTCGGACGAGGAGTGGATACCCAGCGGCAAG--AGGTA 18640 Query 3677 GGAAATGATCCGTCAGGTATCGCA-TTAAAGTTTCTT-TATGCTGACCTGGATATGGATG 3734 || |||| | || || ||||| ||||| ||||| || || || ||||| ||||||| Sbjct 18641 GGCAATGCT---TCCGGCATCGCGCTTAAA--TTCTTATACGCCGATCTGGACATGGATG 18695 Query 3735 CCAACATGATTGAGACAGAGTTCCAAGCATCTATGGAGCATCTACGCTGGTTCATTGATC 3794 ||||| || ||| | ||||| || || ||||||| || | |||||| |||| | Sbjct 18696 CCAACGACATGGAGGCCGAGTTTCAGGCCAGCCTGGAGCAGCTGCTGTGGTTCGTTGACC 18755 Query 3795 AGCACATAGTTAATACTGGCGGCGGTGA--CTTCT-CTAACGAAACAGTTGAATTCATTT 3851 |||| || | || || ||||| || |||| || ||| || |||||||| | Sbjct 18756 AGCATATCGCCAACACGTCCGGCGTGGATTATTCTGATACCGA---TGTAGAATTCATCT 18812 Query 3852 TCAACAGAGACATTTTAATTAACGAAACGGATGCGATAACGAATGCAAAGGATAGT 3907 | ||| |||||||| | || || ||||| || ||| | |||| || ||||| ||| Sbjct 18813 TTAACCGAGACATTATCATCAATGAAACTGAAGCGGTGGCGAACGCCAAGGACAGT 18868 Score = 111 bits (122), Expect = 5e-20 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 10633 GGTCAGGAAGGACGTGCCTACGCCACGATTAACGGTCGTGTAGAGGAAATGTTCTGGCTT 10692 || ||||||| || | ||| | ||||||||||| | || |||||||||| | Sbjct 26265 GGGCAGGAAGCCCGCGGCTATACAACGATTAACGGCCAAGTGCAGGAAATGTTTTATGCC 26324 Query 10693 AAAAAGTTCGAGGCAAAGGTAGAAAAGAACAAAAAAGAAGGAAAGACACTAAACAGACGC 10752 |||| | ||||| | || || || |||||| || || | || | ||| Sbjct 26325 AAAACCCTTGAGGCGACGGCCGAGAAAAACAAAGCGGATTTCAAAGCGCTCGGAAAGCGC 26384 Query 10753 GGTACCCAGCATAAGGCAATGGGATGGAAAGGTACAGGCAGCATGACCATCTACTATGTG 10812 ||||| ||| ||||| | || ||||| ||||| ||||| ||||| || || |||| Sbjct 26385 GGTACGCAGAGCAAGGCTACCGGCTGGAAGGGTACGGGCAGTATGACTATTTATTATGCA 26444 Query 10813 ACCACCCTTTTCCGCCAACTTATGCTCGATTACATGAAGACAGGTAAAGACATTTACTTT 10872 || | |||| |||||| | ||||| ||||| || ||||| || || || | || ||| Sbjct 26445 ACGCCGATTTTTCGCCAAATGATGCTTGATTATATTAAGACCGGCAAGGATACCTATTTT 26504 Query 10873 GATGTTCAGATCACAAATGAAGATCCGACATCTAGTGTTGGAAAGCAAACTGTTGT 10928 ||||||||| | | || || ||||||| || |||| |||||||| || || Sbjct 26505 GATGTTCAGGTGATCAACGAGGATCCGAGCAGTACGATTGGCAAGCAAACGGTGGT 26560 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 17032 GTAGGAAAGATCAAGAATAAAGTAGATATCTCCAATGAAGACCTGAAAATGATGCGTGAA 17091 || ||||| ||| | ||| |||||||| ||| || || ||||| ||| ||||||| Sbjct 30179 GTCGGAAAAATCGAAGATACCGTAGATATTTCCTCCGAGGATCTGAAGATGCTGCGTGAC 30238 Query 17092 CTTGCTGAGATGAAGAATATCCAGAATTTCGTTACTCTGACACCTACCGTGCAGGTTCAG 17151 || || ||| ||| | || || || || |||||| |||| ||||||||||| || Sbjct 30239 CTGGCCGAGGCCAAGTACATTCAAAACTTTGTTACTTTGACTCCTACCGTGCATGTGACA 30298 Query 17152 ACAGGAGACATCAACAAAGGTGCTGACATTGATACG 17187 || || || ||||| || || | ||| | |||||| Sbjct 30299 ACGGGTGATATCAATAACGGAGTTGATTTGGATACG 30334 Score = 82.4 bits (90), Expect = 3e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 4277 GCGAAATGAAAGAGTTCAAAATGACGCTAGAAGAGTTTACAGCTAAAGCTAAGGGTAACT 4336 |||| | ||||||||||| |||||||| || ||||| || | || || |||| ||| Sbjct 19226 GCGAGCTCAAAGAGTTCAAGATGACGCTGGAGGAGTTCACGGAGAAGGCCAAGGACAACG 19285 Query 4337 TAGATGGTCGTTGGACCAAGGAACTAAACAACGTCTACTACAAAACTCGTGTAAGCCGTT 4396 || || || ||||| |||| | ||||||| ||| || || || ||| || ||||| Sbjct 19286 CTGACGGCCGCTGGACGCAGGAGTTGAACAACGCCTATTATAAGACCCGTATATCCCGTT 19345 Query 4397 TAGAGGCACT 4406 ||||||| || Sbjct 19346 TAGAGGCGCT 19355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173676457639608