Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12-
23] 166 sequences; 31,780,530 total letters
Query= NC_029104.1
Length=54312
Score E
Sequences producing significant alignments: (Bits) Value
seq63 141 3e-29
>seq63
Length=35995
Score = 141 bits (156), Expect = 3e-29
Identities = 240/339 (71%), Gaps = 8/339 (2%)
Strand=Plus/Plus
Query 5361 GATTTAAAAAATAGTGTTGGTGACAACGAGGACTTGAAGAAGCAAATCGAAACTCTTCAG 5420
||||| ||||| || || || || || | | || |||||||||||||| ||||||
Sbjct 20983 GATTTGAAAAAGTCTGCAGGCGATAATGAAGCTCTTAAAAAGCAAATCGAAACGCTTCAG 21042
Query 5421 AATGATAACAAAGCTAAGGATGAACAGTATCAAACCAAGATTAAGGATATGCAGATGTCT 5480
|| ||||| | | | || || || | | || | |||||| ||||| | ||
Sbjct 21043 GGCGAGAACAAGACAACTAAAGAGCAATACGAGGCAAAAGTGAAGGATCTGCAGCTCACT 21102
Query 5481 ACAGCTATCAAGCTTGCTTTAGCAGGTGAAGCTCATGATCCTGATCTTATTGCTGGTCTC 5540
||||| | || || ||| | || || ||| |||||||| ||| | | || || ||
Sbjct 21103 ACAGCCGTTAAACTGGCTCTGGCCGGGCAAGTGCATGATCCGGATATCGTGGCGGGGCTT 21162
Query 5541 CTAGACAAATCAAAAATCGAGATCAATGAGGACGGC-ACATTAACAGGTGGTCTTGATGA 5599
|| |||||| | |||||||||||| ||||||||| | |||| || |||||||| ||
Sbjct 21163 CTGGACAAAACCAAAATCGAGATCGGAGAGGACGGCGGCGTTAA-AGCCGGTCTTGAAGA 21221
Query 5600 TCAAGTT-AAGGCGTTGCGTGAGAGCAAGGCTTTTTTGTTTGTCGAAAAACAGGAGGATA 5658
|||| || ||||| || || || ||||||| ||||||||| ||||||||||| |
Sbjct 21222 TCAAATTAAAGGCCTT-CGCGAAAGCAAGGGCTTTTTGTTTACGGAAAAACAGGA-AACG 21279
Query 5659 AAG--GATTTCAGTTTAAAGGAGCACAACCTGCTGAAGG 5695
||| | | | |||||||||||| ||||||| || ||
Sbjct 21280 AAGCCGCCTGGA-TTTAAAGGAGCAAAACCTGCAGACGG 21317
Score = 111 bits (122), Expect = 5e-20
Identities = 390/596 (65%), Gaps = 25/596 (4%)
Strand=Plus/Plus
Query 3323 CTAAACTGGGAGCGAGTGCCGTTCATCTGCTTCAAGTATAACGATGAAGAAATACCATTA 3382
|| ||||||||||| |||||||||| ||||| || || ||||| || ||| || |
Sbjct 18287 CTGAACTGGGAGCGCTTGCCGTTCATTTGCTTTAAATACAACGACGAGGAACAGCCGCTC 18346
Query 3383 ATCAAGTTTATTCAATCACTCATTGATGATTATGACTATCGTAAATCAGATAACGCTAAC 3442
|| | | || || | || || || || ||| || || || ||| | |||
Sbjct 18347 ATTGATCTGGTTAAACGGCAGATCGACGACTACGACCGGAATATCTCGGACAACTCCAAC 18406
Query 3443 AACTTAGAGGATATGCCAAACAGCATTTATGTGTTAAGGGACTATGACGGTACCAATTTA 3502
||||| ||||| |||| |||||| | || ||| | | ||||||||||| || || |
Sbjct 18407 AACTTGGAGGACCTGCCGAACAGCTTATACGTGGTCAAAGACTATGACGGAACGAACGCA 18466
Query 3503 GGGGAGTTCCGATACAATCTAGCTGCTTATCGCGCTGTTAAAGTGGCGGGTGATGGTGGA 3562
| ||||||||| | ||| | || || |||| | | || || || ||
Sbjct 18467 GCGGAGTTCCGCAAAAATTTGTCTATTTTCCGCGTCGCTTTCGTCAACGGGACCGGCGGG 18526
Query 3563 GTAGAAACCATTAGCTTGCCGATTGATACAGAGGCGTTTAAAACT---CATGTGGAG-AT 3618
| || || | | |||| || || || || || | | || ||| | ||| |
Sbjct 18527 ATCGAGACGGTGAACTTGGAAATCGACACGGAAGC---TCACTCTTCCCATATTGAGCAA 18583
Query 3619 GAACAGAAAAGATATCTATGAGTTTGGGCGTGGCGTTGATACGCAGT--CTAGTAACTTT 3676
|| ||| || || || ||||| || || || || ||||| ||| | || | |
Sbjct 18584 CTACGGAAG-GACATTTACGAGTTCGGACGAGGAGTGGATACCCAGCGGCAAG--AGGTA 18640
Query 3677 GGAAATGATCCGTCAGGTATCGCA-TTAAAGTTTCTT-TATGCTGACCTGGATATGGATG 3734
|| |||| | || || ||||| ||||| ||||| || || || ||||| |||||||
Sbjct 18641 GGCAATGCT---TCCGGCATCGCGCTTAAA--TTCTTATACGCCGATCTGGACATGGATG 18695
Query 3735 CCAACATGATTGAGACAGAGTTCCAAGCATCTATGGAGCATCTACGCTGGTTCATTGATC 3794
||||| || ||| | ||||| || || ||||||| || | |||||| |||| |
Sbjct 18696 CCAACGACATGGAGGCCGAGTTTCAGGCCAGCCTGGAGCAGCTGCTGTGGTTCGTTGACC 18755
Query 3795 AGCACATAGTTAATACTGGCGGCGGTGA--CTTCT-CTAACGAAACAGTTGAATTCATTT 3851
|||| || | || || ||||| || |||| || ||| || |||||||| |
Sbjct 18756 AGCATATCGCCAACACGTCCGGCGTGGATTATTCTGATACCGA---TGTAGAATTCATCT 18812
Query 3852 TCAACAGAGACATTTTAATTAACGAAACGGATGCGATAACGAATGCAAAGGATAGT 3907
| ||| |||||||| | || || ||||| || ||| | |||| || ||||| |||
Sbjct 18813 TTAACCGAGACATTATCATCAATGAAACTGAAGCGGTGGCGAACGCCAAGGACAGT 18868
Score = 111 bits (122), Expect = 5e-20
Identities = 202/296 (68%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 10633 GGTCAGGAAGGACGTGCCTACGCCACGATTAACGGTCGTGTAGAGGAAATGTTCTGGCTT 10692
|| ||||||| || | ||| | ||||||||||| | || |||||||||| |
Sbjct 26265 GGGCAGGAAGCCCGCGGCTATACAACGATTAACGGCCAAGTGCAGGAAATGTTTTATGCC 26324
Query 10693 AAAAAGTTCGAGGCAAAGGTAGAAAAGAACAAAAAAGAAGGAAAGACACTAAACAGACGC 10752
|||| | ||||| | || || || |||||| || || | || | |||
Sbjct 26325 AAAACCCTTGAGGCGACGGCCGAGAAAAACAAAGCGGATTTCAAAGCGCTCGGAAAGCGC 26384
Query 10753 GGTACCCAGCATAAGGCAATGGGATGGAAAGGTACAGGCAGCATGACCATCTACTATGTG 10812
||||| ||| ||||| | || ||||| ||||| ||||| ||||| || || ||||
Sbjct 26385 GGTACGCAGAGCAAGGCTACCGGCTGGAAGGGTACGGGCAGTATGACTATTTATTATGCA 26444
Query 10813 ACCACCCTTTTCCGCCAACTTATGCTCGATTACATGAAGACAGGTAAAGACATTTACTTT 10872
|| | |||| |||||| | ||||| ||||| || ||||| || || || | || |||
Sbjct 26445 ACGCCGATTTTTCGCCAAATGATGCTTGATTATATTAAGACCGGCAAGGATACCTATTTT 26504
Query 10873 GATGTTCAGATCACAAATGAAGATCCGACATCTAGTGTTGGAAAGCAAACTGTTGT 10928
||||||||| | | || || ||||||| || |||| |||||||| || ||
Sbjct 26505 GATGTTCAGGTGATCAACGAGGATCCGAGCAGTACGATTGGCAAGCAAACGGTGGT 26560
Score = 84.2 bits (92), Expect = 8e-12
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 17032 GTAGGAAAGATCAAGAATAAAGTAGATATCTCCAATGAAGACCTGAAAATGATGCGTGAA 17091
|| ||||| ||| | ||| |||||||| ||| || || ||||| ||| |||||||
Sbjct 30179 GTCGGAAAAATCGAAGATACCGTAGATATTTCCTCCGAGGATCTGAAGATGCTGCGTGAC 30238
Query 17092 CTTGCTGAGATGAAGAATATCCAGAATTTCGTTACTCTGACACCTACCGTGCAGGTTCAG 17151
|| || ||| ||| | || || || || |||||| |||| ||||||||||| ||
Sbjct 30239 CTGGCCGAGGCCAAGTACATTCAAAACTTTGTTACTTTGACTCCTACCGTGCATGTGACA 30298
Query 17152 ACAGGAGACATCAACAAAGGTGCTGACATTGATACG 17187
|| || || ||||| || || | ||| | ||||||
Sbjct 30299 ACGGGTGATATCAATAACGGAGTTGATTTGGATACG 30334
Score = 82.4 bits (90), Expect = 3e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 4277 GCGAAATGAAAGAGTTCAAAATGACGCTAGAAGAGTTTACAGCTAAAGCTAAGGGTAACT 4336
|||| | ||||||||||| |||||||| || ||||| || | || || |||| |||
Sbjct 19226 GCGAGCTCAAAGAGTTCAAGATGACGCTGGAGGAGTTCACGGAGAAGGCCAAGGACAACG 19285
Query 4337 TAGATGGTCGTTGGACCAAGGAACTAAACAACGTCTACTACAAAACTCGTGTAAGCCGTT 4396
|| || || ||||| |||| | ||||||| ||| || || || ||| || |||||
Sbjct 19286 CTGACGGCCGCTGGACGCAGGAGTTGAACAACGCCTATTATAAGACCCGTATATCCCGTT 19345
Query 4397 TAGAGGCACT 4406
||||||| ||
Sbjct 19346 TAGAGGCGCT 19355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 173676457639608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |