Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12-
23] 166 sequences; 31,780,530 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq70 107 2e-18
seq114 104 2e-17
seq101 98.7 9e-16
seq67 91.5 1e-13
>seq70
Length=566626
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||||| | || | |||||| || ||||| ||| || || || || ||||||||
Sbjct 51902 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 51843
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||| ||||||||||| || ||||| || ||||| | |||
Sbjct 51842 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGA 51783
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236
| || ||| ||||| ||| || |||| ||| | | | ||| || ||||| ||
Sbjct 51782 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 51724
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | |||||| | || || ||||| || || || |||||||||||
Sbjct 51723 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51676
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||||| | || | |||||| || ||||| ||| || || || || ||||||||
Sbjct 51446 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 51387
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||| ||||| || || || ||||| || ||||| | |||
Sbjct 51386 AGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 51327
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC-CGTATCGCTCGACTCCAC 39236
| | ||| |||||| ||| || ||||| ||| | || ||| || ||||| ||
Sbjct 51326 ATACCCTCCTTGTCCTGGATCTTGGTTTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 51268
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| | |||||| | || || ||||| || || || |||||||||||||
Sbjct 51267 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATCT 51218
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||||| | || | |||||| || ||||| ||| || || ||||| || |||||
Sbjct 51674 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 51615
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||| ||||| ||||| || | ||||| ||||| | |||
Sbjct 51614 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 51555
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC-CGTATCGCTCGACTCCAC 39236
| | ||| |||||| ||| || ||||| ||| | || ||| || ||||| ||
Sbjct 51554 ATACCCTCCTTGTCCTGGATCTTGGTTTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 51496
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | |||||| | || || ||||| || || || |||||||||||
Sbjct 51495 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51448
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || || ||||| || || || | || ||
Sbjct 52113 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTC 52054
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| || | ||||| ||||| | ||| | | ||| ||||||
Sbjct 52053 GAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTG 51994
Query 39195 GATTTTCTGTTTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || ||||| ||| | || ||| || ||||| || || | |||||| | |
Sbjct 51993 GATCTTGGTTTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 51935
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 51934 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51904
>seq114
Length=793728
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || ||||| |||||||| || || || | || ||
Sbjct 568164 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 568105
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||| ||||| || || || ||||| || ||||| | ||| | || ||| ||||||
Sbjct 568104 AAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTG 568045
Query 39195 GATTTTCTGTTTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| || |||| ||| | || ||| || ||||| || || | |||||| | |
Sbjct 568044 AATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 567986
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 567985 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567955
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || |||||||| || || || | || ||
Sbjct 567708 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 567649
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| |||||||| || || | ||||||||||| | ||| | || ||| ||||||
Sbjct 567648 GAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 567589
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| || |||| ||| | | | ||| || ||||| || || | |||||| | |
Sbjct 567588 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 567530
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || ||||| || || || |||||||||||||
Sbjct 567529 TGCCGGTCAGGGTCTTGACGAAGATTTGCATCT 567497
>seq101
Length=1000389
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || || || ||| ||||| || || |||||||| || || || |
Sbjct 688366 GCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAATCGGCGAGAGTGCGGCC 688425
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| || || || ||||| |||||||| | || | || || ||
Sbjct 688426 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTT 688485
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
||| ||| || |||| ||| | | | ||| ||| |||||| || || | ||||
Sbjct 688486 GTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 688544
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283
| | || ||||| || || || |||||||||||||
Sbjct 688545 TGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 688580
>seq67
Length=473732
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | |||||||| || || ||| ||||| || || || |||||
Sbjct 308837 GCCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 308896
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
| || || | || || ||||| ||||| || || || ||||| |||||||| | ||
Sbjct 308897 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGG 308956
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235
| || || ||||| ||| || |||| ||| | | | ||| ||| |||||| |
Sbjct 308957 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGA 309015
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282
| || | ||||| | || ||||| || || || ||||||||||||
Sbjct 309016 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 309062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429544730975558
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |