Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq70 111 1e-19 seq101 107 1e-18 seq114 98.7 7e-16 >seq70 Length=566626 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || |||||||| ||||| || || ||| || Sbjct 51220 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51279 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | ||||| || | | ||||| || ||| | || ||||| || Sbjct 51280 GACACGATTGACAACGTCAAAACCAAGA-TCCAGGACAAGGAGGGTATTCCCCCAGACCA 51338 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || ||||| || || || || | ||||| | | ||||||||| Sbjct 51339 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCGCCGATTACAA 51398 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 51399 CATCCAGAAGGAGTCGAC 51416 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || |||||||| ||||| || || ||| || Sbjct 51676 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51735 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| ||| Sbjct 51736 GACACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 51795 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| || || || || | ||||| | | |||||||||| Sbjct 51796 CAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 51855 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 51856 ATCCAGAAGGAGTCGAC 51872 >seq101 Length=1000389 Score = 107 bits (118), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||| | |||| || || || || ||||||||||| || || ||||| ||||| || || | Sbjct 688586 TTACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGT 688527 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | ||||| | || || | || || || | | ||||| ||||| | |||||| Sbjct 688526 CGTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCA 688468 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || || ||| | || || |||||||| || || || || | |||||| | | |||| Sbjct 688467 GACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGAT 688408 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| ||||| ||||| || Sbjct 688407 TACAACATTCAAAAGGAGTCGAC 688385 >seq114 Length=793728 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || |||||||| ||||| || || ||| || Sbjct 567499 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567558 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || ||||| || Sbjct 567559 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 567618 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || || || || | ||||| | | |||||||||| Sbjct 567619 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 567678 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 567679 ATCCAGAAGGAGTCGAC 567695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008916164328