Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq66 113 7e-20 seq54 91.5 2e-13 >seq66 Length=1115558 Score = 113 bits (124), Expect = 7e-20 Identities = 175/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| | |||||| ||||| |||| ||||||||||| | ||||||| | || || Sbjct 115353 ATCTGGGCACAGTACAAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACTTG 115412 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||| || |||| ||||| || | | | || ||||| | || || || Sbjct 115413 TCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGAC-GAGCGCTACTTCATCTC 115471 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||| | | ||||| || |||| |||||| || ||||||||||| || || | || Sbjct 115472 GCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCG 115531 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||||| ||| | ||| || | |||| ||| ||||| ||||| || |||||||| Sbjct 115532 ATTCTCTGGTGAG--GTCCAGTCAGCCGAGG-CTCGATGCTTCTACGGTTTTCAAATCAT 115588 Query 125255 GAT 125257 ||| Sbjct 115589 GAT 115591 >seq54 Length=1353381 Score = 91.5 bits (100), Expect = 2e-13 Identities = 339/529 (64%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | || || |||||| | | ||||| | | | || Sbjct 17560 ACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACGGCGCGC 17619 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| || || || || || | || ||||| | || || ||| Sbjct 17620 TACGTCGACCAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGG 17679 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| ||||| || | || | ||||| || ||| || || | || Sbjct 17680 CACGCTGACGTCTTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAAGGAGGAAGTCCGC 17739 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | || | ||| |||||| | || ||| | |||||| |||| ||| | | | Sbjct 17740 GCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCC 17799 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | ||| | ||| || | ||||||| | | ||||| || ||| || ||| Sbjct 17800 GCCGGCGAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGC 17859 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGT 97165 |||||||| ||| || | | ||||| | |||||||| | | | |||| | Sbjct 17860 GAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGA-T 17918 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 | || | | | || ||| | || || | ||| ||||| || ||||| | || | Sbjct 17919 CCCCGCGCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTT 17978 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 ||| ||||||||||| ||| ||| || |||||| || | || || ||||| Sbjct 17979 CATGCTCTACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGATCAA 18038 Query 97286 GGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || || ||||||| || || | |||||| | | ||||||||| Sbjct 18039 GTCGTCGAACTTGTGCACCGAGATCATCGAGTACTCGGCACCGGACGAG 18087 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| ||||||||| | || ||||| | |||||| || | ||||| || Sbjct 19005 ATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTCGGCCGATCGA 19064 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || ||| |||||| |||||| |||| | || ||| ||||||| | | | Sbjct 19065 GGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCAC-TTGTCGAGCCCGACGA-TGG 19122 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 || | | || ||||| ||||| |||| ||||| || || |||||||| ||||||| Sbjct 19123 CGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGGTATGTACT 19182 Query 98215 A 98215 | Sbjct 19183 A 19183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057699355120