Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12-
23] 162 sequences; 35,135,563 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq56 181 2e-41
seq78 168 1e-37
seq80 163 4e-36
>seq56
Length=448332
Score = 181 bits (200), Expect = 2e-41
Identities = 160/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 219793 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 219852
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || ||| |||| ||||||| ||| | ||| | ||||||||||||
Sbjct 219853 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACTCGAGGCGTTCTCAAGATCTTCCTC 219912
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| |||||
Sbjct 219913 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACT 219972
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 219973 TCGCTCGATGTCGTCTACGC 219992
>seq78
Length=594305
Score = 168 bits (186), Expect = 1e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 226860 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 226919
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 226920 GTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 226979
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| |||| | | ||| ||||||||||| || || ||||| ||||||
Sbjct 226980 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 227039
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || |||| || ||||| | | | || ||||| ||
Sbjct 227040 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 227095
Score = 168 bits (186), Expect = 1e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 310668 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 310609
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 310608 GTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 310549
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| |||| | | ||| ||||||||||| || || ||||| ||||||
Sbjct 310548 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 310489
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || |||| || ||||| | | | || ||||| ||
Sbjct 310488 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 310433
>seq80
Length=2807877
Score = 163 bits (180), Expect = 4e-36
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 640189 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 640130
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 640129 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 640070
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 640069 GAGAACGTCATCCGTGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 640010
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 640009 TCGCTCGATGTCGTCTACGC 639990
Score = 163 bits (180), Expect = 4e-36
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 688436 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 688495
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 688496 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 688555
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 688556 GAGAACGTCATCCGTGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 688615
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 688616 TCGCTCGATGTCGTCTACGC 688635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075051882266
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |