Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq92 93.3 9e-14 seq77 87.8 4e-12 seq56 86.0 1e-11 seq28 86.0 1e-11 >seq92 Length=809976 Score = 93.3 bits (102), Expect = 9e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 127834 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 127775 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| ||||||| | || || ||| ||||||||||||| Sbjct 127774 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 127715 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || ||| |||| | || | ||||| |||||| || |||||||| ||| | Sbjct 127714 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 127656 Query 218016 GGGTCTTCAG 218025 |||||| ||| Sbjct 127655 GGGTCTGCAG 127646 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||| || |||| |||||||||| Sbjct 10183 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 10242 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 10243 CCCGCATTGGGC 10254 Score = 86.0 bits (94), Expect = 1e-11 Identities = 247/380 (65%), Gaps = 0/380 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || |||||| |||||||| | || || |||||| | || | ||| ||||||||| Sbjct 127150 GATTTCATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGCTCTATTCCC 127091 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| |||| || || || ||| || | || | |||||||| Sbjct 127090 TCTGTCATTGATGGGTTCAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 127031 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || || || || ||||||| || || ||||| || |||| || | Sbjct 127030 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGAGGTTACGTCGCCGAGCACTCGGCG 126971 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||| |||| |||| || |||| | ||| |||| || | | || Sbjct 126970 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGCCTGGCGCAACAGTTCGTC 126911 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || ||| |||||||| |||||| | ||||| ||| Sbjct 126910 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTCTGCAAGGT 126851 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877 || || || ||||| || | || ||||| || || | || || | ||||| Sbjct 126850 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAATGTATCATCCATCACGCGTAGC 126791 Query 218878 GTGTTCAATCAGGCCGATGA 218897 || ||| ||| || ||||| Sbjct 126790 GTCTTCCATCCCGCTGATGA 126771 >seq77 Length=1232722 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 637489 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 637548 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 637549 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 637608 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 637609 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 637668 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 637669 GGCTTCCT 637676 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 643986 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 643927 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 643926 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 643867 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 643866 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 643807 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 643806 GGCTTCCT 643799 >seq56 Length=448332 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||| || |||| |||||||||| Sbjct 410227 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 410168 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 410167 CCCGCATTGGGC 410156 >seq28 Length=22716 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||| || |||| |||||||||| Sbjct 19913 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 19972 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 19973 CCCGCATTGGGC 19984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834666596242