Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12-
23] 162 sequences; 35,135,563 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq92 93.3 9e-14
seq77 87.8 4e-12
seq56 86.0 1e-11
seq28 86.0 1e-11
>seq92
Length=809976
Score = 93.3 bits (102), Expect = 9e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| |||||| |||| || ||||| || || |||| || | | ||||| ||
Sbjct 127834 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 127775
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | |||||| ||||||| | || || ||| |||||||||||||
Sbjct 127774 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 127715
Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015
|| || ||| |||| | || | ||||| |||||| || |||||||| ||| |
Sbjct 127714 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 127656
Query 218016 GGGTCTTCAG 218025
|||||| |||
Sbjct 127655 GGGTCTGCAG 127646
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||| ||||| | ||||||||||| || |||| ||||||||||
Sbjct 10183 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 10242
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 10243 CCCGCATTGGGC 10254
Score = 86.0 bits (94), Expect = 1e-11
Identities = 247/380 (65%), Gaps = 0/380 (0%)
Strand=Plus/Minus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|| |||||| |||||||| | || || |||||| | || | ||| |||||||||
Sbjct 127150 GATTTCATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGCTCTATTCCC 127091
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
|| | ||||| |||| || || || ||| || | || | ||||||||
Sbjct 127090 TCTGTCATTGATGGGTTCAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 127031
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
|| || || || || ||||||| || || ||||| || |||| || |
Sbjct 127030 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGAGGTTACGTCGCCGAGCACTCGGCG 126971
Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757
|||||||||||||| |||| |||| || |||| | ||| |||| || | | ||
Sbjct 126970 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGCCTGGCGCAACAGTTCGTC 126911
Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817
|| |||||| | ||| | || ||| |||||||| |||||| | ||||| |||
Sbjct 126910 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTCTGCAAGGT 126851
Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877
|| || || ||||| || | || ||||| || || | || || | |||||
Sbjct 126850 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAATGTATCATCCATCACGCGTAGC 126791
Query 218878 GTGTTCAATCAGGCCGATGA 218897
|| ||| ||| || |||||
Sbjct 126790 GTCTTCCATCCCGCTGATGA 126771
>seq77
Length=1232722
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || ||||| ||||| |||||||||||||| || | | || ||||| || |
Sbjct 637489 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 637548
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| | || |||| || ||||| || |||||| ||||| ||||| ||||||
Sbjct 637549 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 637608
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | | ||||| || |||| || | ||| |||| ||||| ||||||||
Sbjct 637609 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 637668
Query 279879 GGCTTCCT 279886
||||||||
Sbjct 637669 GGCTTCCT 637676
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || ||||| ||||| |||||||||||||| || | | || ||||| || |
Sbjct 643986 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 643927
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| | || |||| || ||||| || |||||| ||||| ||||| ||||||
Sbjct 643926 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 643867
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | | ||||| || |||| || | ||| |||| ||||| ||||||||
Sbjct 643866 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 643807
Query 279879 GGCTTCCT 279886
||||||||
Sbjct 643806 GGCTTCCT 643799
>seq56
Length=448332
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||| ||||| | ||||||||||| || |||| ||||||||||
Sbjct 410227 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 410168
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 410167 CCCGCATTGGGC 410156
>seq28
Length=22716
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||| ||||| | ||||||||||| || |||| ||||||||||
Sbjct 19913 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 19972
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 19973 CCCGCATTGGGC 19984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834666596242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |