Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq54 358 1e-93 seq66 127 4e-24 >seq54 Length=1353381 Score = 358 bits (396), Expect = 1e-93 Identities = 847/1265 (67%), Gaps = 32/1265 (3%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| ||||||| ||||||||||||||||||| |||||| | | ||| |||| | Sbjct 18386 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTTGCGCGCCTCGGGC 18327 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||| || || ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 18326 GAATCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCG 18267 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || |||||| | || ||| || || || | ||| ||||| Sbjct 18266 ATGGGGCGGTGGCGGAAATTGGAGTTCTGCGCCTCGATGACAGGATAGTAATTGACGTCG 18207 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | |||||| ||| || | | ||||||| Sbjct 18206 ATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTTTTAAAGTCG 18147 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| || | | || || ||| ||| ||| || | ||| |||| Sbjct 18146 TACACGCCG---TTCT------TGATGAAGCTCGGCAACGCGAT-----CGA----GGCC 18105 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||||||||| ||| |||| | ||||| || ||||||||||| | ||| Sbjct 18104 AAGTTGCAGACGGCGCACTCGTCCGGTGCCGAGTACTCGATGATCTCGGTGCACAAGTTC 18045 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 ||||||| || || |||| || || || || || ||| ||||||||||||| Sbjct 18044 GACGACTTGATCGTCCCAAGGTTCTTTTGGTTTGATTTCTTGTTCGCGGCGTCCTTGTAG 17985 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 ||||||||||| || || |||| |||||| |||| | || ||| || | Sbjct 17984 AGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAGAATTGCGTACCAAAGCTTTTGC 17925 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 || || ||| | || |||||| ||||| | ||| ||| |||| Sbjct 17924 GCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAAC 17865 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCG 244990 || ||| |||| |||| ||||||||| || ||||| | |||| ||||||| Sbjct 17864 TCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCACTCG 17805 Query 244991 CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCC 245050 ||| || ||| ||| | || ||||||||| ||||| |||||||| || |||||| || Sbjct 17804 CCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGCGCAAAGAAGAGATCA 17745 Query 245051 CTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| ||| ||||| | || |||| || ||||||||||| Sbjct 17744 CGAGCGCGGACTTCCTCCTTGCC-GTGATTCTTGCGAAGGTCCAGGAACTCAAAGACGTC 17686 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| || ||||| Sbjct 17685 AGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTC 17626 Query 245170 CACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 || | | | |||| ||| || || | || || |||||||| |||| ||| Sbjct 17625 GACGTAGCGCGCCGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTAGCC 17566 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCC 245289 ||| ||||| |||||||| ||| | | | || |||| |||| || || | || Sbjct 17565 GTTCGTGCCGGCGATGTAGGAGCCGGTTGCGCGGATGTTGTGGATGCTCAAACCGATACC 17506 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 |||||| |||||||||||| ||||| |||||| ||||| ||||| || || Sbjct 17505 ACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAAATGCCTTCAATCGA 17446 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 || |||||| ||| ||| || ||||| || ||||| || | || | | | ||| Sbjct 17445 ATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTT 17386 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGA 245468 ||| || || || ||||||||||||||||| |||| || | || ||| | ||| | Sbjct 17385 GAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGC-GCTCGGACATGAGGTTGTAAGACTGCA 17327 Query 245469 GCAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG 245526 ||| ||| || |||| || |||||||| | |||| | |||||| ||||||| Sbjct 17326 --AGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGCTG 17269 Query 245527 -GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTT 245583 |||||| ||| | | || | ||| | |||| |||||||||||||||||| || Sbjct 17268 CGGGCGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGCGTTTT 17212 Query 245584 GAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTC 245643 ||| |||||||| |||||| || ||| || || | ||||| || ||| | || Sbjct 17211 GAAGCCAAAGTAATTGTAGCCGAAATCGCGGTCGTAGATAACGGCGCTGTTGAGGCGGTC 17152 Query 245644 GGCGT 245648 ||||| Sbjct 17151 GGCGT 17147 >seq66 Length=1115558 Score = 127 bits (140), Expect = 4e-24 Identities = 186/260 (72%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | ||||| |||||||||||||||||| || | | ||||||||| | |||||| Sbjct 116077 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTAATGCCCGGATTGACCTTC 116136 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| |||||| ||||| Sbjct 116137 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 116196 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| |||| || ||| | |||||||| |||||| Sbjct 116197 TC---CCACCTCGAGC-GAAGACCTCACCCCGACACCGTCGCGCTCATCATCAAGGAGGC 116252 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||| || || |||||||| ||| | || || | || ||| || |||||||||| Sbjct 116253 CGTCGAAATTGAGAAGGAATTCTTGACCGAGGCTCTTCCCTGCGGTTTGATCGGCATGAA 116312 Query 42983 CCACGACCTCATGTGCAAGT 43002 | | ||||||||| ||| Sbjct 116313 TGCCAAGCTCATGTGCCAGT 116332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337287713120