Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq95 116 3e-21 seq89 100 3e-16 seq78 93.3 4e-14 >seq95 Length=1340552 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | |||||| | || ||||| || ||||| ||||| || ||||| Sbjct 532944 ATACCACCGCGGAGACGCAACACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCC 533003 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || || ||| | ||||||||||| ||||| || Sbjct 533004 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGG 533063 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || ||||| || |||| || | || | ||||| || ||||| Sbjct 533064 GGAATGCCCTCCTTGTCCTGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTC 533122 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | ||| ||||| || || || || || || |||||||| Sbjct 533123 GACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 533173 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | | ||| | |||||||| || |||||||||||||| |||||| Sbjct 804250 TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTTTGGATATTGTAATCGGC 804309 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || ||| || | || || || ||| | || | ||||| ||||| || || Sbjct 804310 GAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGG 804369 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 |||||| ||||| || ||||| || |||| || | || | ||||| || ||||||| Sbjct 804370 AATGCCCTCTTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 804428 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || | ||| |||||||| || || || || || || ||||| Sbjct 804429 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 804477 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | |||||| | || ||||| || ||||| ||||| || ||||| Sbjct 533172 ATACCACCGCGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCC 533231 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || || ||| | ||||||||||| ||||| || Sbjct 533232 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGG 533291 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || ||||| || |||| || | || | ||||| || ||||| Sbjct 533292 GGAATGCCCTCCTTGTCCTGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTC 533350 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || ||||| || || || || || || || |||||| Sbjct 533351 GACCTCGAGCGTGATGGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCATC 533402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || ||| | || ||||| || ||||| ||||| || ||||| | Sbjct 532719 CCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 532778 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || || || ||| | || | ||||| ||||| || ||| Sbjct 532779 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 532838 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || ||||| || || |||| || | || | ||||| || || ||||| Sbjct 532839 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGAGGATTCGAC 532897 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||| ||||| || || || || || ||||||||||| Sbjct 532898 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAAATTTGCAT 532945 >seq89 Length=998246 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| | ||| ||| || | || Sbjct 823531 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 823590 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 823591 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 823650 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | ||| ||||| || Sbjct 823651 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGT 823709 Query 45317 TAGAGTTTTTACAAAAATTTGC 45338 ||||| || ||||| |||||| Sbjct 823710 AAGAGTCTTGACAAAGATTTGC 823731 >seq78 Length=594305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || |||||||| || || ||| | ||| ||| || | || Sbjct 306275 TGGAGAGTCGACTCTTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 306216 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 306215 TTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 306156 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | || ||||| || Sbjct 306155 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 306097 Query 45317 TAGAGTTTTTACAAAAATTTGCA 45339 || || || ||||| ||||||| Sbjct 306096 GAGGGTCTTGACAAAGATTTGCA 306074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002284693520