Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq54 168 8e-37 seq92 136 5e-27 seq71 129 7e-25 seq66 89.7 6e-13 >seq54 Length=1353381 Score = 168 bits (186), Expect = 8e-37 Identities = 529/808 (65%), Gaps = 21/808 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| ||||| |||| ||||| || | || ||||| || Sbjct 17265 CCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 17324 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | | || || | |||||| | || || |||| Sbjct 17325 CTTGCAGTCTTACAACCTCATGTCCGAGCGCTACTTT-ACCCACGCCTCGCCGACGCTCT 17383 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||||| | | | ||||| | Sbjct 17384 TCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATG 17443 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| || | |||||||||| ||| |||| || || | ||||| ||| || | Sbjct 17444 ATTCGATTGAAGGCATTTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCG 17503 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 |||||||||| || |||||| | || | || | | | ||| || | | || || Sbjct 17504 GTGGTATCGGTTTGAGCATCCACAACATCCGCGCAACC--GGCTCCTACATCGCCGGCAC 17561 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || | || | || || | || ||||| || || | ||| ||| |||||||| Sbjct 17562 GAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACGGCGCGCTA 17621 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||||| | ||| | |||| |||| || ||||| || Sbjct 17622 CGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTG 17678 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | |||||||| || | || || || || | ||||| | || Sbjct 17679 GCACGCTGACGTCTTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAAGGAGGAAGTCCG 17738 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||||| || ||||||||||| |||||||||||| || | || ||| Sbjct 17739 CGCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAG 17796 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | ||| | ||| ||||||| || || | | | || ||||| ||| ||| | | Sbjct 17797 GCCGCCGGCGAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTAT 17856 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || || ||||| ||| | | | || ||||| | || | || || | ||| Sbjct 17857 GGCGAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACG 17916 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || |||||| || | || ||| ||||| | || Sbjct 17917 ATCCCCGC-GCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCC 17975 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| |||||| ||| | || || |||||||| | || ||| Sbjct 17976 CTTCATGCTCTACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGAT 18035 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATC 112406 |||| || ||| | || || || ||| Sbjct 18036 CAAGTCGTCGAACTTGTGCACCGAGATC 18063 >seq92 Length=809976 Score = 136 bits (150), Expect = 5e-27 Identities = 250/358 (70%), Gaps = 10/358 (3%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || ||||||||||| || || || |||| ||| ||| | |||||||||||| Sbjct 127542 TTGATGATCAGACCCTTGATATGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 127601 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 127602 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 127661 Query 176843 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTG-AGCTGTGTGACAGAGGCATCACGA 176899 | ||||| ||| ||||| ||| || ||| | | || | || | | || ||||| Sbjct 127662 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 127718 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || |||| || || | |||||||||||| |||| || ||||| || |||| Sbjct 127719 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 127778 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||||| Sbjct 127779 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 127838 Query 177020 --CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAT 177075 || | | | |||||| || ||||||||||| || | ||| || ||| || || Sbjct 127839 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTCGAGCTTGACAAGACCCGTGAT 127894 >seq71 Length=189300 Score = 129 bits (142), Expect = 7e-25 Identities = 282/417 (68%), Gaps = 4/417 (1%) Strand=Plus/Minus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| | || |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 139415 CCGCTTTTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 139356 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||| ||||| || ||| ||||||||| | ||| | || || Sbjct 139355 CGAGACGACGCCCTTTTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTG 139296 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | | || ||||| ||||||||| | ||||| ||| || ||| ||| ||| | ||||| Sbjct 139295 GATTGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 139236 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTATC 13829 ||| || || ||| | || ||| ||| |||||| || | |||||| | ||||| | || Sbjct 139235 CCACGAGTCCCCGCGTCGTGGTCGCAC-CTTTGTCACGAGGAAGATCTCCCGAGC-TGTC 139178 Query 13830 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 13889 | ||| | ||| || |||| | | | | | || || || | || || | Sbjct 139177 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGT 139118 Query 13890 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 13949 |||||||| ||||| ||||| || || | ||||||| ||| | || ||||| | Sbjct 139117 GATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGCAAGACAAG 139058 Query 13950 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 14006 ||||||| | ||| | || |||||||||||||| | || | | |||| ||||| Sbjct 139057 CCCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCTGTCAAGGAGTTCGTTGAG 139001 >seq66 Length=1115558 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || ||||| ||| | || || Sbjct 287235 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 287176 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| || |||||| | ||| | || || Sbjct 287175 CGAGACGACCCCCTTCTACCCTCGTTCGCCTTATGGAGTCGCCAAGTTGTACGCCTTCTG 287116 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 287115 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 287056 Query 13772 CCATGAATCACC 13783 ||| || || || Sbjct 287055 CCACGAGTCCCC 287044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741142996640