Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq54 237 3e-57 seq66 86.0 1e-11 >seq54 Length=1353381 Score = 237 bits (262), Expect = 3e-57 Identities = 749/1147 (65%), Gaps = 43/1147 (4%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAA 221479 || ||||||||||||||||| |||||| ||||||||| |||| |||||||| ||| Sbjct 18380 GCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG---CTTGCGCGCCTCGGGCGAA 18324 Query 221480 GTGAAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||| ||||| ||| || |||| | ||||||| || || || |||||||| |||| Sbjct 18323 TCGAACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGA 18266 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 |||| | ||| | ||||| ||| || || ||||| | |||||||||| Sbjct 18265 TGGGGCGGTGGCGGAAATTGGAGTTCTGCGCCTCGATGACAGGATAGTAATTGACGTCGA 18206 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||| | ||| | || || ||| || || |||||| || ||| | | | Sbjct 18205 TGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTTT------TAA 18152 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | || ||||| || || | | || ||| ||| | || ||||| Sbjct 18151 AGTCGTACACGCCGT--TCTTGATGAAGCTCGGCAAC-GCGAT--------CGA-GGCCA 18104 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTT 221775 ||| || ||||| ||||||| | || | |||| |||||||| || || | ||| Sbjct 18103 AGTTGCAGACGGCGCACTCGTCC--GGTGCCGAGTACTCGATGATCTCGGTGCACAAGTT 18046 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 ||||||| ||||| |||| || || || || || || || ||||||||||| Sbjct 18045 CGACGACTTGATCGTCCCAAGGTTCTTTTGGTTTGATTTCTTGTTCGCGGCGTCCTTGTA 17986 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||| ||||| |||||| || | ||| ||| | ||||| || ||| || | | Sbjct 17985 GAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAGAATTGCGTACCAAAGCTTTTG 17926 Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC 221955 ||| | ||| ||||| | ||||| |||||| || | | || || | | Sbjct 17925 CGCGGGGATCGTTTTCTTGGCGCGGCCCTC---CTTTTCGTATT---TCTCGAACAAGGC 17872 Query 221956 A---AACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 |||| ||| || || | |||| ||||| || |||||| || | ||| Sbjct 17871 GCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGG 17812 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||| | | | | | ||| | || ||||||||| || || ||||| ||||| || Sbjct 17811 CCACTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGCGCAAAGAA 17752 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 |||||| | | || |||||| ||||| || || | || |||| |||||||| Sbjct 17751 GAGATCACGAGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGAAGGTCCAGGAACTCAAA 17692 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 | |||||||||||||||||| || |||| || | || ||||| |||||||||||||| Sbjct 17691 GACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACC 17632 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 || || || | | || |||| ||| || || | || || | ||||| || Sbjct 17631 TTGGTCGACGTAGCGCGCCGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 17572 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGC 222311 ||||| ||||| ||||| | ||| || | | ||| ||| | || | Sbjct 17571 GTAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTTGCGCGGATGTT-GTGGATGCTCAAAC 17513 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 |||||||||||||| || ||||| | ||||| ||||||| ||||| ||||| | Sbjct 17512 CGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAAATGCCTT 17453 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || || || ||||| | | | ||| ||||| ||||| | ||| | | | | | Sbjct 17452 CAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTC 17393 Query 222432 AGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACG 222491 |||||| || ||||| || |||||| |||||||||| | ||||| || | ||| | Sbjct 17392 CGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTAAG 17333 Query 222492 TCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGT 222551 || | ||| | | |||| || ||||| || | |||| | |||| ||||| Sbjct 17332 ACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGT 17273 Query 222552 ACTGGGG 222558 ||| || Sbjct 17272 GCTGCGG 17266 >seq66 Length=1115558 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/199 (70%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC-----GCTCTAT 25567 ||||||||||||||||| || || ||||||||||| ||| |||| || |||| | Sbjct 115389 TGGACCGCCGAAGAGATGGACTTGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAG 115448 Query 25568 CCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTA 25627 || ||||||| | || || | |||| | || || || || ||||| || || | Sbjct 115449 CC--CGACGAGCGCTACTTCATCTCGCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCA 115506 Query 25628 TAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGT 25687 | || |||||||| || |||| ||||| | | || || |||| | ||||| | Sbjct 115507 TCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGAGGTCCAGTCAGCCGAGGCTCGAT 115566 Query 25688 GTTTCTACGGTTTCCAGAT 25706 | ||||||||||| || || Sbjct 115567 GCTTCTACGGTTTTCAAAT 115585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842919089280