Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq54 156 5e-33 seq71 125 9e-24 seq66 109 7e-19 seq92 86.0 7e-12 >seq54 Length=1353381 Score = 156 bits (172), Expect = 5e-33 Identities = 593/924 (64%), Gaps = 15/924 (2%) Strand=Plus/Plus Query 75145 TTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||||||| ||||||| || ||| ||| | | || |||| |||| || Sbjct 17199 TTACTTTGGCTTCAAAACGCTCGAGCGCTCCTACTTGCTTCGCATCGACGGCAAGGTCGC 17258 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||| ||| ||||| ||||||| ||||| ||||||||||||| | |||||||| Sbjct 17259 CGAACGCCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGA 17318 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAAC 75324 |||||| || | ||| || |||||| | | || | ||||| | || || Sbjct 17319 GCGCGTCTTGCAGTCTTACAACCTCATGTCCGAGCGCTACTTTACCCACGCCTCGCCGAC 17378 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 |||||||| || || || || |||||| | || || ||||| || | | || Sbjct 17379 GCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAA 17438 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 ||| || || || | || || || | || || | | ||| |||| ||||| ||| Sbjct 17439 GGATGATTCGATTGAAGGCATTTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGAC 17498 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGG 75503 || || ||||| || || |||||| | | | || | ||| || ||| Sbjct 17499 CGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCAACCGG--CTCCTACATCGCC 17556 Query 75504 GG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || || | || | || || | || ||||| || || | ||| ||| ||| Sbjct 17557 GGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACGGCG 17616 Query 75563 CGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAA 75616 ||||| || | |||| || ||||| | || || ||||| ||||| | || Sbjct 17617 CGCTACGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAG 17673 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || || || | |||||||| || | || || || || | || || Sbjct 17674 CCGTGGCACGCTGACGTCTTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAAGGAGGAA 17733 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | || | | |||||||| | | || |||||||| || || |||||| |||| || Sbjct 17734 GTCCGCGCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTC 17793 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 |||| | || | ||| |||| ||||| || | | | || || || ||| ||| | Sbjct 17794 GAGGCCGCCGGCGAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTC 17853 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856 || || ||||| ||| | | | || || ||| ||||||| | ||||| Sbjct 17854 TATGGCGAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAA 17913 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | || || || | | ||||| | || |||||| | | ||| || ||||| | Sbjct 17914 ACGATCCCCGC-GCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAA 17972 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || | ||||| |||||||| || |||||||| ||||||||||| | || || Sbjct 17973 CCCCTTCATGCTCTACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGAC 18032 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 |||||| || || | ||||| || || | |||||| | | ||| ||| || Sbjct 18033 GATCAAGTCGTCGAACTTGTGCACCGAGATCATCGAGTACTCGGCACCGGACGAGTGCGC 18092 Query 76036 TGTTTGCAATTTGGCATCAATCGC 76059 || ||||| ||||| || ||||| Sbjct 18093 CGTCTGCAACTTGGCCTCGATCGC 18116 >seq71 Length=189300 Score = 125 bits (138), Expect = 9e-24 Identities = 274/408 (67%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 ||||| |||| | | |||| ||| ||||| |||||||||| ||| | || || | || Sbjct 139002 TCAACGAACTCCTTGACAGGGTGGGTCTCACCCGTCGCGAGGACAAAGTCGTCGGGCTTG 139061 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 ||||| || | ||| |||||| | || || ||||| ||| || ||||| || | Sbjct 139062 TCTTGCTGCATCATCCTCCACATACCCTCGACGTAGTCGGCGGCGTGTCCCCAATCACGC 139121 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACG 177738 || | | || ||||| | ||| | || | ||| | || | ||| Sbjct 139122 TTGGCCTCCATATTGCCGAGGTAGAGGCAGTCCTGTTGACCGAGCGAGATCTCGGCGACA 139181 Query 177739 CCATCAGTA-ATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAA 177797 | || | | |||||| | ||||||||| | ||| || | ||| || ||||||||||| Sbjct 139182 GC-TCGGGAGATCTTCCTCGTGACAAAGGTGCGACCACGACGCGGGGACTCGTGGTTGAA 139240 Query 177798 GAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTG 177857 | ||| ||| ||| || ||||| || || | || ||||| || ||||| | |||| Sbjct 139241 CAAGATACCGTTGCACGCGTACATGCCGTACGCCTCGCGGTAGTTCTTGACAATCCAGAA 139300 Query 177858 AGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTG 177917 ||| ||| |||| ||| || || || || ||||| ||||| ||| ||| | ||| Sbjct 139301 GGCGTACAACTTGGCGACTCCGTAAGGCGAACGAGGGTAAAAGGGCGTCGTCTCGGATTG 139360 Query 177918 TGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || || || ||| || || ||| ||| ||||| ||||||||||| Sbjct 139361 AGGGGTCTCGACGACCTTGCCGTACAACTCGGAAGTCGAGGCTTGGTA 139408 >seq66 Length=1115558 Score = 109 bits (120), Expect = 7e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177748 ATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCG 177807 ||||| | ||||| ||| | || || | || || ||||||||||||||||| ||| Sbjct 287011 ATCTTTCTCGTGACGAAGGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACCG 287070 Query 177808 GAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAAT 177867 ||| || ||||| | || || || ||||| || ||||||| |||| ||| ||| Sbjct 287071 TTGCACGCGTACATGTCGTACGACTCGCGGTAGTTCTTGACGATCCAGAAGGCGTACAAC 287130 Query 177868 TTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCT 177927 |||| ||| ||||| || || ||||||||||| ||| ||| | || || || || Sbjct 287131 TTGGCGACTCCATAAGGCGAACGAGGGTAGAAGGGGGTCGTCTCGGACTGAGGGGTCTCG 287190 Query 177928 CGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||| || || ||| |||||| || ||||| ||||| Sbjct 287191 ACGACCTTGCCGTACAACTCCGAGGTCGAGGCCTGGTA 287228 >seq92 Length=809976 Score = 86.0 bits (94), Expect = 7e-12 Identities = 236/354 (67%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 13547 ATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGA--A 13604 || || ||| || |||| | || || |||||||| || |||||| | | | || | Sbjct 127894 ATCACGGGTCTTGTCAAGCTCGAAGATGCGAACAACGCTGGTACG--AGGAACGGGTCCA 127837 Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||| || ||||| | || || || ||||| || || | ||||| || ||||||| Sbjct 127836 AGTGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGG 127777 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTC 13724 ||||||| ||||| || |||| ||||| ||||| | || || || | || || | Sbjct 127776 CTGTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGC 127717 Query 13725 GGGACGCTTCGGTGGCACAGCTCACATCAAACCAG--GAG-TTCAA-CGATCTCAAGAAG 13780 | || || ||| ||| ||| | | || | | ||| ||||| ||||| ||| || Sbjct 127716 GTGAAGCGGCGG--GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATC--AAGCAG 127661 Query 13781 ATCCTTGGTCTTCAACAAGGAAAAGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGT 13840 ||| | ||||| || || || |||| ||| || || || || || || Sbjct 127660 ATCTTGGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGACTCGCTCCGTTACGGCAAG 127601 Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATC 13894 || ||||| ||| | ||| ||| | ||||| || || ||||||||||| ||| Sbjct 127600 CTCATGATCATGGCCGATCAAGATCACGATGGATCGCATATCAAGGGTCTGATC 127547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568391946560