Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq54 226 3e-53 seq66 102 1e-15 seq99 98.7 1e-14 seq95 96.9 4e-14 >seq54 Length=1353381 Score = 226 bits (250), Expect = 3e-53 Identities = 335/471 (71%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||||||||||||||||| ||| |||| ||||||||||| |||| |||||| || Sbjct 17630 TGGTCGACGTAGCGCGCCGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 17571 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 17570 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTTGCGCGGATGTTGTGGATGCTCAAACCG 17511 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||| ||||| || Sbjct 17510 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAAATGCCTTCA 17451 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || || || ||||| |||||||| | ||| ||| Sbjct 17450 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 17391 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGT-AGGT 1630364 |||||||||||||| |||| || ||| || | || |||||| || || || Sbjct 17390 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTAAGAC 17331 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 17330 TGCAAG-ACGCGC------------TCAATGTCGTGA---CCGTGGATGCCGACGGCGAC 17287 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| ||| || || ||| |||| |||| || | | || ||||| Sbjct 17286 ACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 17228 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | || ||| ||||||||| || | ||||||||||||| Sbjct 17227 AGCGCTCGAGCGTTTTGAAGCCAAAGTAATTGTAGCCGAAATCGCGGTCGT 17177 Score = 125 bits (138), Expect = 9e-23 Identities = 286/439 (65%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || |||||||||||||| ||| | |||| | |||| || ||||||| ||||| | Sbjct 18070 ACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTCCCAAGGTTCTTTTGGTTTG 18011 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 || ||| |||||||||||| ||||||| |||| ||| || |||| ||| ||| Sbjct 18010 ATTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCT 17951 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNN 1628341 ||| || || |||| | || ||||||| | || |||||||||| Sbjct 17950 CGAGAATTGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTT 17891 Query 1628342 NNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCT 1628401 || | |||| ||| ||||| |||||||| || | Sbjct 17890 CGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTT 17831 Query 1628402 CGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCAC 1628461 ||| || || ||||| | ||| ||||| ||| | | | || ||| ||||| || Sbjct 17830 CGGCGGGGCAGAAGAGAGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGG 17771 Query 1628462 ACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 1628521 |||| || || | ||||| || || || ||| |||||||||||||| ||||| Sbjct 17770 GAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGATTCTTGC 17711 Query 1628522 TGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 1628581 ||||| || | || | | ||| |||||||||||||| |||||| || ||||| | Sbjct 17710 GAAGGTCCAGGAACTCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTC 17651 Query 1628582 CCTTGCGCTTGCCGCCGCC 1628600 | |||||| ||| || Sbjct 17650 CGGGACGCTTGTTGCCACC 17632 Score = 120 bits (132), Expect = 4e-21 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || |||||| | ||||||| |||||||| || Sbjct 19231 TGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATACCC 19172 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || || ||| ||||| |||||||||||||| || | ||||| | Sbjct 19171 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCGTCGGG 19112 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||||| ||| | |||||||||| Sbjct 19111 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGATCGGCCGA 19053 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 19052 CAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 18994 Query 1627220 CG 1627221 || Sbjct 18993 CG 18992 >seq66 Length=1115558 Score = 102 bits (112), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 869704 GAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGAC 869763 ||| || || ||| ||||||| |||||||||||| |||||||||||| || ||||| Sbjct 115535 GAATCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGAC 115476 Query 869764 GTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGGACGGTGTCGGC 869820 |||| ||| |||| |||||||||| ||||| |||||| | |||| Sbjct 115475 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTT 115416 Query 869821 GCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | | ||||| ||| ||||||||||| | || ||||||||||| |||||| Sbjct 115415 GGACAAGTCCATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCCTTCTTGTAC 115364 >seq99 Length=1884034 Score = 98.7 bits (108), Expect = 1e-14 Identities = 145/203 (71%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1355785 GCTTGGACAGCTCTCCGGG-AGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1355727 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||| | |||| || ||| || || || ||| || ||||||| || | Sbjct 1355726 TGGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGCACGCTTCGATGGCGATGCGCTCAA 1355670 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| || || || ||||| Sbjct 1355669 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAAATACCGGTGTCGG 1355610 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 1355609 GGTGGACTTGCTTCAACACCTTG 1355587 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | |||||||||||||||| || Sbjct 220828 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAAGTCTGGATCTCGCGCGACGTGA 220769 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| | ||||| || | |||||| | |||||| || | Sbjct 220768 TCGTCGCCTTGTGGTTGT---ATTGCGCGAGCTTGGACGCCTCGAGGGTGATGCGCTCAA 220712 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||| | Sbjct 220711 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCCG 220652 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||| | | ||| ||| Sbjct 220651 GGTGAACCTGCCTCAACACTTTG 220629 >seq95 Length=1340552 Score = 96.9 bits (106), Expect = 4e-14 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 1048285 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 1048344 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || || | ||||||||||||||||||||||| || |||||||| Sbjct 1048345 -TTCGACAAGCTGGAAGCTCTTTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 1048403 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 1048404 CTTTGAGATTGG 1048415 Score = 91.5 bits (100), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| |||| || | | || || || || | Sbjct 951138 TCGACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGG 951079 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| | Sbjct 951078 GTCGCCACAAGCTCGTCATCCTCGACGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAG 951019 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 951018 CGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACC 950959 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | | |||||||| | | || ||||| |||||||| Sbjct 950958 AGAGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCAT 950916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107125905521354