Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12-
23] 162 sequences; 35,135,563 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq54 210 3e-48
seq66 111 2e-18
seq99 95.1 2e-13
seq95 86.0 9e-11
>seq54
Length=1353381
Score = 210 bits (232), Expect = 3e-48
Identities = 202/259 (78%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982
|||| |||||||| || ||||| ||||| | ||||||| |||||| || || ||| |
Sbjct 17372 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCA 17431
Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042
||||||| |||||||| || ||||| || |||||||||||| ||||||||||||||
Sbjct 17432 CGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTCAAGACGTGCGCGCTCATCT 17491
Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102
||||| | ||||| || |||||||| | ||||| | ||||| | ||| |||||
Sbjct 17492 CCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCAACCGGCTCCTACA 17551
Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162
| || ||||| |||||| | || |||||| | || |||||||| || || | ||| |||
Sbjct 17552 TCGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACA 17611
Query 260163 CGGCGCGCTACGTCGACCA 260181
|||||||||||||||||||
Sbjct 17612 CGGCGCGCTACGTCGACCA 17630
Score = 102 bits (112), Expect = 1e-15
Identities = 286/445 (64%), Gaps = 6/445 (1%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| |||||| || ||||| || |||||| || ||||||||||| ||| ||
Sbjct 17632 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTC 17691
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
| | | |||||||| ||||| |||||||| |||| ||| |||| ||
Sbjct 17692 TTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 17745
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
|||||||| | | || |||| ||| || || ||| || | | | ||| | ||
Sbjct 17746 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGC 17805
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027
|| ||| | ||||| ||||| |||| || |||||||| |||||| |||||||| |
Sbjct 17806 GAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAG 17865
Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087
|| |||| | | ||| | || | |||||
Sbjct 17866 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCG 17925
Query 262088 CGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTC 262147
| | || | |||| || ||| ||| |||||| |||| || |||| |||| |||| ||
Sbjct 17926 CAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCTC 17985
Query 262148 TACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCC 262207
||||||||||||| ||| || ||||| ||||||| || || | | | |
Sbjct 17986 TACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGATCAAGTCGTCG 18045
Query 262208 AACCTGTGCACCGAGATCGTCCAGT 262232
||| |||||||||||||| || |||
Sbjct 18046 AACTTGTGCACCGAGATCATCGAGT 18070
Score = 96.9 bits (106), Expect = 5e-14
Identities = 172/243 (71%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230
|||||||||||| ||| ||||||||| |||||| | | ||| | | | || |||
Sbjct 18992 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 19050
Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290
|| ||||||| || | ||| |||||||| || ||||||||| | || | | ||
Sbjct 19051 TGTCGGCCGATCGAGGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 19109
Query 263291 A-CCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348
| ||||||| | | ||| |||||||||||||| ||| | ||| || || || ||
Sbjct 19110 AGCCCGACGATGGCGCAGC-TCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAA 19168
Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408
||| || |||||||| ||||||| || |||| | | || || | |||||||||||
Sbjct 19169 GACGGGTATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCGATCAAGTTCACCGTCGA 19228
Query 263409 TCA 263411
||
Sbjct 19229 CCA 19231
>seq66
Length=1115558
Score = 111 bits (122), Expect = 2e-18
Identities = 171/238 (72%), Gaps = 7/238 (3%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| |||| | |||| || ||||||||||| ||||||||||||||||| ||| | |||
Sbjct 115352 GATCTGGGCACAGTAC-AAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 115410
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891
| | |||| | | |||||| ||| | |||||||||| | ||||||
Sbjct 115411 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 115470
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||||||||||||| |||||||||||| ||| |||||||| ||||||| ||| ||
Sbjct 115471 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 115529
Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
|| || | || |||||||| | | ||||| || | || ||||| || || |||
Sbjct 115530 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 115586
>seq99
Length=1884034
Score = 95.1 bits (104), Expect = 2e-13
Identities = 161/228 (71%), Gaps = 13/228 (6%)
Strand=Plus/Plus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
||||||| | ||||| || |||||| |||| | || || |||||| | |||
Sbjct 1355587 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATT-TCGAACAAGGCGATGCT 1355640
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035
|||| | |||||||| ||||||||||| | || ||||||| || ||| || | ||
Sbjct 1355641 GATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCATCGAAGCGTGCAAGCT 1355700
Query 725036 GGCGCGCTCCA---ACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092
||| || || ||||| || || ||| ||||||||||||||||| | || ||
Sbjct 1355701 CGCGACCTACAACCACAAG-GC--GACCATCTCGTCGCGCGAGATCCAGACCTCGGTCCG 1355757
Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||||| | | ||| || ||| ||| ||||||| |||| || |||||
Sbjct 1355758 ATTGATCCT-CCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1355804
Score = 91.5 bits (100), Expect = 2e-12
Identities = 136/189 (72%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
||| |||||| | ||| ||| | |||||||| ||||||||||| | || ||||||
Sbjct 220665 CTCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCAC 220724
Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073
| |||||| ||| | || ||| | | |||| | ||| |||||| ||||||
Sbjct 220725 CCTCGAGGC--GTC--CAAGCTCGCGCAATACAACCACAAGGCGACGATCACGTCGCGCG 220780
Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133
|||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| |
Sbjct 220781 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 220840
Query 725134 AGGGCACCA 725142
| |||||||
Sbjct 220841 AAGGCACCA 220849
>seq95
Length=1340552
Score = 86.0 bits (94), Expect = 9e-11
Identities = 156/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 332878 CAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG-TTGCAGGCCA 332936
|| |||||| || || ||||| | | |||||||| | ||| | || ||||| || |
Sbjct 950912 CAAGATGGCGCATCGACTCTGAATCGGCTCGATGATC-TTGTTGCTCTGGTTGCACGCAA 950970
Query 332937 GGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCG 332996
||| || || || || |||| ||||||| ||| ||||| || || |||||
Sbjct 950971 AGGCGAAGCGAGTGGTGTTGGAGAAGATTTCCATCGTCCTGCGGAGCGCTTGCTGGGCTC 951030
Query 332997 CCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGAT 333056
|||| || | | ||||| ||||||||||||| || ||||||||| || | || ||
Sbjct 951031 CCGGGGTCATCGAATCGGCTTCGTCGAGGATGACGAGCTTGTGGCGACCCGGTGGGAGTG 951090
Query 333057 CAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102
||| ||||| |||| |||||| ||||| ||||||||
Sbjct 951091 TGACCTTTTTCTGGGCGAAAGCCTTGATGCGGTTGCGTACGACGTC 951136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177795574802244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |