Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq54 210 3e-48 seq66 111 2e-18 seq99 95.1 2e-13 seq95 86.0 9e-11 >seq54 Length=1353381 Score = 210 bits (232), Expect = 3e-48 Identities = 202/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| |||||| || || ||| | Sbjct 17372 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCA 17431 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| |||||||| || ||||| || |||||||||||| |||||||||||||| Sbjct 17432 CGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTCAAGACGTGCGCGCTCATCT 17491 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | ||||| || |||||||| | ||||| | ||||| | ||| ||||| Sbjct 17492 CCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCAACCGGCTCCTACA 17551 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || ||||| |||||| | || |||||| | || |||||||| || || | ||| ||| Sbjct 17552 TCGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACA 17611 Query 260163 CGGCGCGCTACGTCGACCA 260181 ||||||||||||||||||| Sbjct 17612 CGGCGCGCTACGTCGACCA 17630 Score = 102 bits (112), Expect = 1e-15 Identities = 286/445 (64%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||| ||| || Sbjct 17632 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTC 17691 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | |||||||| ||||| |||||||| |||| ||| |||| || Sbjct 17692 TTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 17745 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| || || ||| || | | | ||| | || Sbjct 17746 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGC 17805 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| |||| || |||||||| |||||| |||||||| | Sbjct 17806 GAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAG 17865 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087 || |||| | | ||| | || | ||||| Sbjct 17866 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCG 17925 Query 262088 CGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTC 262147 | | || | |||| || ||| ||| |||||| |||| || |||| |||| |||| || Sbjct 17926 CAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCTC 17985 Query 262148 TACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCC 262207 ||||||||||||| ||| || ||||| ||||||| || || | | | | Sbjct 17986 TACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGATCAAGTCGTCG 18045 Query 262208 AACCTGTGCACCGAGATCGTCCAGT 262232 ||| |||||||||||||| || ||| Sbjct 18046 AACTTGTGCACCGAGATCATCGAGT 18070 Score = 96.9 bits (106), Expect = 5e-14 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 18992 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 19050 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| |||||||| || ||||||||| | || | | || Sbjct 19051 TGTCGGCCGATCGAGGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 19109 Query 263291 A-CCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 | ||||||| | | ||| |||||||||||||| ||| | ||| || || || || Sbjct 19110 AGCCCGACGATGGCGCAGC-TCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAA 19168 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| || |||||||| ||||||| || |||| | | || || | ||||||||||| Sbjct 19169 GACGGGTATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCGATCAAGTTCACCGTCGA 19228 Query 263409 TCA 263411 || Sbjct 19229 CCA 19231 >seq66 Length=1115558 Score = 111 bits (122), Expect = 2e-18 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 115352 GATCTGGGCACAGTAC-AAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 115410 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 115411 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 115470 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||| |||||||||||| ||| |||||||| ||||||| ||| || Sbjct 115471 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 115529 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 115530 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 115586 >seq99 Length=1884034 Score = 95.1 bits (104), Expect = 2e-13 Identities = 161/228 (71%), Gaps = 13/228 (6%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | || || |||||| | ||| Sbjct 1355587 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATT-TCGAACAAGGCGATGCT 1355640 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||||||||| | || ||||||| || ||| || | || Sbjct 1355641 GATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCATCGAAGCGTGCAAGCT 1355700 Query 725036 GGCGCGCTCCA---ACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||| || || ||||| || || ||| ||||||||||||||||| | || || Sbjct 1355701 CGCGACCTACAACCACAAG-GC--GACCATCTCGTCGCGCGAGATCCAGACCTCGGTCCG 1355757 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1355758 ATTGATCCT-CCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1355804 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| | || |||||| Sbjct 220665 CTCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCAC 220724 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073 | |||||| ||| | || ||| | | |||| | ||| |||||| |||||| Sbjct 220725 CCTCGAGGC--GTC--CAAGCTCGCGCAATACAACCACAAGGCGACGATCACGTCGCGCG 220780 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 220781 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 220840 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 220841 AAGGCACCA 220849 >seq95 Length=1340552 Score = 86.0 bits (94), Expect = 9e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 332878 CAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG-TTGCAGGCCA 332936 || |||||| || || ||||| | | |||||||| | ||| | || ||||| || | Sbjct 950912 CAAGATGGCGCATCGACTCTGAATCGGCTCGATGATC-TTGTTGCTCTGGTTGCACGCAA 950970 Query 332937 GGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCG 332996 ||| || || || || |||| ||||||| ||| ||||| || || ||||| Sbjct 950971 AGGCGAAGCGAGTGGTGTTGGAGAAGATTTCCATCGTCCTGCGGAGCGCTTGCTGGGCTC 951030 Query 332997 CCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGAT 333056 |||| || | | ||||| ||||||||||||| || ||||||||| || | || || Sbjct 951031 CCGGGGTCATCGAATCGGCTTCGTCGAGGATGACGAGCTTGTGGCGACCCGGTGGGAGTG 951090 Query 333057 CAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 ||| ||||| |||| |||||| ||||| |||||||| Sbjct 951091 TGACCTTTTTCTGGGCGAAAGCCTTGATGCGGTTGCGTACGACGTC 951136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177795574802244