Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12- 23] 162 sequences; 35,135,563 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq71 145 9e-30 seq92 127 2e-24 seq54 127 2e-24 seq66 102 1e-16 >seq71 Length=189300 Score = 145 bits (160), Expect = 9e-30 Identities = 285/416 (69%), Gaps = 4/416 (1%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| ||||| ||| ||| || || ||| || || || ||| | Sbjct 139414 CGCTTTTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCC 139355 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||| ||||| || ||| ||||||||| | ||| | || ||| Sbjct 139354 GAGACGACGCCCTTTTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTGG 139295 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 | ||||| || ||||||||| | ||||| ||| |||||| ||| ||| | |||||| Sbjct 139294 ATTGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAAC 139235 Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATCA 7469 || || || ||| | || ||| ||| ||||||||| | |||||| | |||| | | || Sbjct 139234 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATCTCCCGA-GCTGTCG 139177 Query 7470 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAG 7529 | ||| | ||| || |||| | | | | | || || || | || | | | Sbjct 139176 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 139117 Query 7530 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 7589 ||||||| ||||| ||||| || || | ||||||| ||| | || ||||| | Sbjct 139116 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGCAAGACAAGC 139057 Query 7590 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTGAGGCGGTTCATTGAG 7645 ||||||| | ||| | || |||||||||||||| | || | | |||| ||||| Sbjct 139056 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCTGTCAAGGAGTTCGTTGAG 139001 >seq92 Length=809976 Score = 127 bits (140), Expect = 2e-24 Identities = 248/358 (69%), Gaps = 10/358 (3%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || ||||||||||| || || || |||| ||| ||| | |||||||||||| Sbjct 127542 TTGATGATCAGACCCTTGATATGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 127601 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 127602 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 127661 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTG-AGCTGTGTGACAGAGGCATCGCGA 169336 | ||||| ||| ||||| ||| || ||| | | || | || | | || || || Sbjct 127662 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 127718 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || |||| || || | |||||||||||| |||| || ||||| ||||| | Sbjct 127719 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 127778 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455 ||||||| ||| ||||| | ||| || || || || ||||| | ||||||||| || || Sbjct 127779 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 127838 Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAT 169512 || | | | |||||| || ||||||||||| || | ||| || ||| || || Sbjct 127839 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTCGAGCTTGACAAGACCCGTGAT 127894 >seq54 Length=1353381 Score = 127 bits (140), Expect = 2e-24 Identities = 503/783 (64%), Gaps = 19/783 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| |||| || || || | |||||||| || Sbjct 17265 CCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 17324 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| || | ||| || |||||| | | || | ||||| | || || ||||| Sbjct 17325 CTTGCAGTCTTACAACCTCATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTT 17384 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || | || || ||||| || | | ||||| || Sbjct 17385 CAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGA 17444 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || || || | || || | | ||| |||| ||||| ||| || || Sbjct 17445 TTCGATTGAAGGCATTTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 17504 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 ||||| || || |||||| | | | || | ||| || ||| || || Sbjct 17505 TGGTATCGGTTTGAGCATCCACAACATCCGCGCAACCGG--CTCCTACATCGCCGGCACG 17562 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || | || | || || | || ||||| || || | ||| ||| |||||||| Sbjct 17563 AACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACGGCGCGCTAC 17622 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| ||| | |||| |||| || ||||| ||| Sbjct 17623 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTGG 17679 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | |||||||| || | || || || || | ||||| | ||| Sbjct 17680 CACGCTGACGTCTTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAAGGAGGAAGTCCGC 17739 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || |||||||||| || ||||||||||| |||||||||||| || | || |||| Sbjct 17740 GCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGG 17797 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | ||| ||||||| || || | | | || || || ||| ||| | | | Sbjct 17798 CCGCCGGCGAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATG 17857 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | || ||||| ||| | | | || ||||| | || || || || | ||| Sbjct 17858 GCGAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGA 17917 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | || || || | | | ||| | || |||||| || | || ||| ||||| | || Sbjct 17918 TCCCCGC-GCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCC 17976 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| |||||| ||| | || || |||||||| | || |||| Sbjct 17977 TTCATGCTCTACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGATC 18036 Query 104990 AAG 104992 ||| Sbjct 18037 AAG 18039 >seq66 Length=1115558 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || ||| || || || || | Sbjct 287234 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 287175 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| || |||||| | ||| | || ||| Sbjct 287174 GAGACGACCCCCTTCTACCCTCGTTCGCCTTATGGAGTCGCCAAGTTGTACGCCTTCTGG 287115 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 287114 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 287055 Query 7412 CATGAATCACC 7422 || || || || Sbjct 287054 CACGAGTCCCC 287044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259618896880