Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015435.1_202016-12-
23] 162 sequences; 35,135,563 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq95 107 1e-18
seq78 107 1e-18
seq89 104 2e-17
>seq95
Length=1340552
Score = 107 bits (118), Expect = 1e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || |||||||| ||||| || || ||| ||
Sbjct 804705 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 804646
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| |||||||| || | || ||||| |||
Sbjct 804645 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAA 804586
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || || || ||||| || || || || | ||||| | | ||||||||||
Sbjct 804585 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 804526
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 804525 ATTCAGAAGGAGTCGAC 804509
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||| || || || |||||||| ||||| || || ||| ||
Sbjct 804933 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 804874
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| |||||||| || | || ||||| |||
Sbjct 804873 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAA 804814
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || || || ||||| || || || || | ||||| | | ||||||||||
Sbjct 804813 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 804754
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 804753 ATTCAGAAGGAGTCGAC 804737
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || || || ||||| || |||||||| ||||| || || ||| ||
Sbjct 532945 ATGCAAATTTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAATCCTCG 532886
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | | ||||| || || | || ||||| ||
Sbjct 532885 GACACGATTGACAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGACCA 532827
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || || || ||||| || || || || | ||||| | | ||||||||
Sbjct 532826 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 532767
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 532766 CATCCAGAAGGAGTCGAC 532749
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| || || ||||| || || ||||| ||||| || || || ||
Sbjct 533401 ATGCAGATCTTCGTTAAGACGCTTACGGGCAAGACCATCACGCTCGAGGTCGAGTCGTCG 533342
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 533341 GACACGATTGACAACGTCAAGACCAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGACCA 533283
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| || || || || || ||||| || || || || | ||||| | | ||||||||
Sbjct 533282 ACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 533223
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 533222 CATCCAGAAGGAGTCGAC 533205
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || || ||||| || |||||||| ||||| || || || ||
Sbjct 533173 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 533114
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 533113 GACACGATTGACAACGTCAAGACCAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGACCA 533055
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| || || || || || ||||| || || || || | ||||| | | ||||||||
Sbjct 533054 ACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 532995
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 532994 CATCCAGAAGGAGTCGAC 532977
>seq78
Length=594305
Score = 107 bits (118), Expect = 1e-18
Identities = 147/203 (72%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665
||| | |||| || || || || ||||||||||| || || ||||| ||||| || || |
Sbjct 306068 TTACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGT 306127
Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724
| | ||||| | || || | || || || | | ||||| ||||| | ||||||
Sbjct 306128 CGTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCA 306186
Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784
|| || || ||| | || || |||||||| || || || || | ||||| || | |||
Sbjct 306187 GACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGAC 306246
Query 23785 TACAACATACAAAAAGAGTCCAC 23807
|||||||| ||||||||||| ||
Sbjct 306247 TACAACATCCAAAAAGAGTCGAC 306269
>seq89
Length=998246
Score = 104 bits (114), Expect = 2e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672
||| || || || || || || ||||| || |||||||| ||||| || || || | ||
Sbjct 823731 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 823672
Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731
||| | || || | || || || | | ||||| ||||| | |||||||| || |
Sbjct 823671 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 823613
Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791
| ||| | || ||||||||||| || || || || | ||||| || | ||| |||||||
Sbjct 823612 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 823553
Query 23792 TACAAAAAGAGTCCAC 23807
| ||||| ||||||||
Sbjct 823552 TCCAAAAGGAGTCCAC 823537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338008932642296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |