Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq28 122 1e-22 >seq28 Length=749551 Score = 122 bits (134), Expect = 1e-22 Identities = 416/643 (65%), Gaps = 4/643 (1%) Strand=Plus/Minus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || ||| | ||| || || | ||| |||||||| |||||||| || || | ||| Sbjct 3965 CCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGCGCCAAAAA 3906 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| | | | |||||| || || ||||| ||| || |||||| | | Sbjct 3905 GAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAA 3846 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | |||| |||||||| || | ||| || | | |||| || || ||||| || || Sbjct 3845 GACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACC 3786 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | ||| | ||||||||||| || || | | ||| || | || || || || Sbjct 3785 TTGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 3726 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || || || |||| || ||| || | || || || || || | ||| Sbjct 3725 GTAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACC 3666 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCT 54368 || || || || | || ||||| | ||||| ||| || | ||| || |||||||| | Sbjct 3665 GATACCACCGGCGGTCTTGGAGATGAGAGCGCA-CGTCTTGAGCGTGTCGTAGATGCCTT 3607 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | || ||||||| |||| | | | ||||| || | || | || |||| Sbjct 3606 CGATCGAATCATCCTTCATCGTGACCAAGAAACACGACGAAAGCTGCGGGTGAGGCGTTC 3547 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | || || || | || || || ||||| ||||| | || || | || ||||||| Sbjct 3546 CGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTACCGCTCGGACATGAGGTTGTACG 3487 Query 54489 TCTCGATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 || | || | | || || || ||||| || || ||||||||||| | |||| Sbjct 3486 ACT-GCAAGACGCGCTCGATGTCGTGCCCGTGAATGCCGACGGCGACACGCATGAGCATG 3428 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 ||||| || | ||| ||| |||| || || ||||||||||| || | ||| Sbjct 3427 TGCTGCGGGCGTTCGGCGACCTTGCCGTCAATGCGAAGCAAGTAGGAGCGCTCGAGCGTT 3368 Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 || || ||||| |||||||| || || || ||||| |||| Sbjct 3367 TTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATAA 3325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721147287280