Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 269 2e-67 seq10 123 2e-23 seq24 122 8e-23 seq47 98.7 9e-16 >seq28 Length=749551 Score = 269 bits (298), Expect = 2e-67 Identities = 962/1494 (64%), Gaps = 52/1494 (3%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 4807 GAAGTGTAAGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 4748 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 4747 ATTGGCGCGCACACAAGCGAGTTGCGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 4688 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 ||||||||||||| ||| ||| |||||| |||||| ||||| |||||| |||| Sbjct 4687 GACCAGTCCCACAAATCACTCGGGGTCACAC---CCCACAAGTCGTACTGCAACTCGCCC 4631 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCATA 22722 || ||||| || ||| || ||| ||| | ||| Sbjct 4630 TGAGAAGCCGGAGATCCGGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCGATA 4571 Query 22723 ------TATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAA 22776 | |||| || || |||| || ||| | |||| ||| || || |||||||| Sbjct 4570 GCAAAGTTGCGCGCCATGT-CGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAA 4512 Query 22777 GATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCA 22832 ||||| |||||| | | | ||| | ||||| ||| ||||||| || || Sbjct 4511 GATTTGCTTGTTGAGCTTGCGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCA 4456 Query 22833 CGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACA 22892 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 4455 TGAACGCGTCGGCTAGACCTTGCACTCCGATGCCGATGGGGCGGTGACGGAAGTTGGAGT 4396 Query 22893 CTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCA 22952 | |||||| | ||||| | || ||||| | | ||||||||| | | Sbjct 4395 TCTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGA 4336 Query 22953 CAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACT 23012 ||| || | | ||||||||| ||||| || | | || || Sbjct 4335 CAACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TTCTTGATGAAGCT 4278 Query 23013 TGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTA 23072 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 4277 CGGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGA 4219 Query 23073 CAATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTT 23130 || ||||| || | ||| | || |||| |||||||| | || | ||||| | ||| Sbjct 4218 TGATCTCGGTGCACAAATT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTC 4160 Query 23131 TCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGAT 23190 | | |||| | ||||||||||||||| | || |||| || |||||||| | ||||| Sbjct 4159 TTGTTTGCG-GCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAG 4101 Query 23191 GATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGT 23249 || || ||| | | || ||| | | |||| | | | || || | |||| Sbjct 4100 AATTGCGTACCAAAGCTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGACCCTCCTTTTCGT 4042 Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCA 23309 | || | | |||| || | || || | || || ||| || ||||| | || Sbjct 4041 ATTTCTCGAACAAGGCCTTGAACTCTTCGCCATAGACTTCGTGGAGACCGGGGGCTTCGG 3982 Query 23310 TCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 || || | ||| ||| | | || || || ||| || ||||| || | Sbjct 3981 CGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAA 3922 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 |||| || || | || || || || ||||| || ||||| |||||| |||||| | Sbjct 3921 TCCAGAGCGCCAAAAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAA 3862 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 |||| || || || ||||| || ||||||||||||||||| | || || || || | Sbjct 3861 GGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGG 3802 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | ||| ||||| || || |||||||| || || ||||| ||||| || | ||||| | Sbjct 3801 GACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGG 3742 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609 | |||| ||||| || |||| ||| || | || || | || || | || Sbjct 3741 GGACGATGCCGTTCGAGTAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGT 3682 Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669 |||| | | ||||| || || ||| | | || || || | ||||| || || | Sbjct 3681 TGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTGAGCG 3622 Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729 ||||||||||||| ||||| || || || ||| ||||||||||||||| || | | Sbjct 3621 TGTCGTAGATGCCTTCGATCGAATCATCCTTCATCGTGACCAAGAAACACGACGAAAGCT 3562 Query 23730 GCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG 23789 ||| | ||||| |||| ||| || ||||| |||||| |||||||| | | | Sbjct 3561 GCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTACCGCTCGG 3502 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 |||| || ||||||| | | | || || ||||| | ||||| || |||| ||||| Sbjct 3501 ACATGAGGTTGTACGACTGCAAGACGCGCTCGATGTCGTGCCCGTGAATGCCGACGGCGA 3442 Query 23850 CGCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGAT 23906 | ||||| | ||||| || || | || ||||| | ||||| ||| | || | Sbjct 3441 CACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTT---GCCGTCAATGCGAAGCAAGT 3385 Query 23907 ATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | || || | | |||||| || ||||| |||| ||| || || || |||| Sbjct 3384 AGGAGCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 3331 >seq10 Length=1963216 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 1805792 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 1805733 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 1805732 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 1805674 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| ||||| ||| | || || || || ||| | Sbjct 1805673 ACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 1805614 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || ||| |||| || Sbjct 1805613 ACAACATCCAAAAGGAGTCGACCCTCCATTTGGTCCT 1805577 >seq24 Length=1725410 Score = 122 bits (134), Expect = 8e-23 Identities = 172/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 1413596 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1413537 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 1413536 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 1413478 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| ||||| ||| | || || ||| | |||||| ||| Sbjct 1413477 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATTACAAC 1413418 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 |||||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 1413417 ATTCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 1413359 >seq47 Length=1359276 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 821256 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 821315 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||| || | || || ||||| Sbjct 821316 GACACGATTGACAACGTCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 821375 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| ||| | || || | || | |||||| ||| Sbjct 821376 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCGCCGATTACAAC 821435 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 821436 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 821467 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 567477 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567536 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 567537 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 567596 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || || || | |||||| ||| Sbjct 567597 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 567656 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 567657 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 567688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 567933 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567992 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 567993 GACACGATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 568052 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| || ||||||||||| ||| | || || Sbjct 568053 CAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGA 568087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766060103120