Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12-
23] 61 sequences; 27,876,544 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq28 113 6e-20
>seq28
Length=749551
Score = 113 bits (124), Expect = 6e-20
Identities = 405/627 (65%), Gaps = 10/627 (2%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| || | ||| |||||||| |||||||| || || | ||| ||||| | | |
Sbjct 3946 ACACGCTCCATGAAGAGATCGGGAATCCAGAGCGCCAAAAAGAGATCACGAGCGCGGACT 3887
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
||||| || || ||||| ||| || |||||| | | | |||| ||||||||
Sbjct 3886 TCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGC 3827
Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201
|| | ||| || || | |||| || || ||||| || || || || | ||| | |||
Sbjct 3826 TCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCG 3767
Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261
|||||||| || || | | ||| || | || || || || || || || ||||
Sbjct 3766 GTGTTATTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTAGCCGTTCGTGCCGGCA 3707
Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321
|| ||| || | || || || ||| || | ||| || || || || | ||
Sbjct 3706 ATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTG 3647
Query 72322 GAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380
||||| | ||||| ||| || | ||| || |||||||| || || ||||||| ||||
Sbjct 3646 GAGATGAGAGCGCA-CGTCTTGAGCGTGTCGTAGATGCCTTCGATCGAATCATCCTTCAT 3588
Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 72440
| | | ||||| || | || | || ||||| || || || | || ||
Sbjct 3587 CGTGACCAAGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGG 3528
Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT-CAATAGCTGATTCTA 72499
|| ||||| ||||| | || |||| || ||||||| || ||| | | || |
Sbjct 3527 CGAGGCGTGGGTAAAGTACCGCTCGGACATGAGGTTGTACGACTGCAAGA-CGCGCTCGA 3469
Query 72500 TATC---CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556
| || || ||| || || || ||||||||||| | ||| ||||| || | |||
Sbjct 3468 TGTCGTGCCCGTGA---ATGCCGACGGCGACACGCATGAGCATGTGCTGCGGGCGTTCGG 3412
Query 72557 CGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 72616
||| |||| | || | ||||||||| || | ||||| || ||||| ||||
Sbjct 3411 CGACCTTGCCGTCAATGCGAAGCAAGTAGGAGCGCTCGAGCGTTTTGAAGCCAAAGTAGT 3352
Query 72617 TGTATGAAAAGTCTCGTTCGTAAATAA 72643
|||| || || || ||||| ||||
Sbjct 3351 TGTAGCCGAAATCGCGGTCGTAGATAA 3325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138688256360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |