Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12-
23] 61 sequences; 27,876,544 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq24 181 2e-41
seq25 163 4e-36
>seq24
Length=1725410
Score = 181 bits (200), Expect = 2e-41
Identities = 160/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || |||||||| || |||||||| ||||| ||||||||||||||
Sbjct 923020 CGCGACAACATCCAGGGTATCACCAAACCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 922961
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || ||| |||| ||||||| ||| | ||| | ||||||||||||
Sbjct 922960 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACTCGAGGCGTTCTCAAGATCTTCCTC 922901
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 922900 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 922841
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 922840 TCGCTCGATGTCGTCTACGC 922821
Score = 168 bits (186), Expect = 1e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 1408948 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1409007
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 1409008 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 1409067
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| |||| | | ||| ||||||||||| || || ||||| ||||||
Sbjct 1409068 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 1409127
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || |||| || ||||| | | | || ||||| ||
Sbjct 1409128 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1409183
Score = 168 bits (186), Expect = 1e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 1488688 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1488629
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 1488628 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 1488569
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| |||| | | ||| ||||||||||| || || ||||| ||||||
Sbjct 1488568 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 1488509
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || |||| || ||||| | | | || ||||| ||
Sbjct 1488508 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1488453
>seq25
Length=2644084
Score = 163 bits (180), Expect = 4e-36
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 501035 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 500976
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 500975 GTCAAGCGTATCTCCGGCCTTATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 500916
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| |||||||| || | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 500915 GAGAACGTTATCCGCGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 500856
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 500855 TCGCTCGATGTCGTCTACGC 500836
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 549108 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 549167
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 549168 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 549227
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||||||| || | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 549228 GAGAATGTTATCCGCGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 549287
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 549288 TCGCTCGATGTCGTCTACGC 549307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075144227273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |