Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq24 181 2e-41 seq25 163 4e-36 >seq24 Length=1725410 Score = 181 bits (200), Expect = 2e-41 Identities = 160/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || |||||||| || |||||||| ||||| |||||||||||||| Sbjct 923020 CGCGACAACATCCAGGGTATCACCAAACCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 922961 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || ||| |||| ||||||| ||| | ||| | |||||||||||| Sbjct 922960 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACTCGAGGCGTTCTCAAGATCTTCCTC 922901 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| ||||||||||| || || ||||| |||||| Sbjct 922900 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 922841 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 922840 TCGCTCGATGTCGTCTACGC 922821 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 1408948 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1409007 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| || | ||| | |||||||||||| Sbjct 1409008 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 1409067 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||| | | ||| ||||||||||| || || ||||| |||||| Sbjct 1409068 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 1409127 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || |||| || ||||| | | | || ||||| || Sbjct 1409128 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1409183 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 1488688 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1488629 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| || | ||| | |||||||||||| Sbjct 1488628 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 1488569 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||| | | ||| ||||||||||| || || ||||| |||||| Sbjct 1488568 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 1488509 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || |||| || ||||| | | | || ||||| || Sbjct 1488508 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1488453 >seq25 Length=2644084 Score = 163 bits (180), Expect = 4e-36 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 501035 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 500976 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 500975 GTCAAGCGTATCTCCGGCCTTATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 500916 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| |||||||| || | || ||| ||||| ||||| || || ||||| |||||| Sbjct 500915 GAGAACGTTATCCGCGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 500856 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 500855 TCGCTCGATGTCGTCTACGC 500836 Score = 158 bits (174), Expect = 2e-34 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 549108 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 549167 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 549168 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 549227 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||||||| || | || ||| ||||| ||||| || || ||||| |||||| Sbjct 549228 GAGAATGTTATCCGCGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 549287 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 549288 TCGCTCGATGTCGTCTACGC 549307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075144227273