Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10 86.0 5e-12 seq47 84.2 2e-11 >seq10 Length=1963216 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||| || || ||||||||||| ||||||||||||||| Sbjct 1805562 CCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 1805621 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| || | || || || || ||||| || Sbjct 1805622 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGG 1805681 Query 16829 ACGCCCTCTTTGTC-GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| | | ||| | ||| || | | | | |||||| | ||| Sbjct 1805682 ATGCCTTCCTTGTCTTGGATCTTGGT-CTTGACGTTGTCGATCGTGTCGGACGACTCGAC 1805740 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGC 16933 || | |||||| || || || || || || |||||||| || ||| Sbjct 1805741 CTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 1805786 >seq47 Length=1359276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| || ||||| |||||||| || || ||||||||||| Sbjct 567931 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 567872 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| ||| | || | ||||||||||| || Sbjct 567871 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 567812 Query 16829 ACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| |||| | | | ||| | || || | | | | ||||| || ||| Sbjct 567811 ATACCCTCCTTGTCCTGGATCTTGGT-TTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 567753 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || |||||||| || ||||| || |||||||| Sbjct 567752 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 567705 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 16703 ATTTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAG 16762 ||| |||| || || || | ||| |||| || ||||| |||||||| || ||||||||| Sbjct 822171 ATTGACCC-CCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAG 822113 Query 16763 TCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 ||||| | || | | ||||| | || ||||| ||| | || | ||||||||||| Sbjct 822112 TCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCT 822053 Query 16823 ACAGGCACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 || | ||||| |||| | | | ||| | || || | | | | ||||| || Sbjct 822052 GGGGGAATACCCTCCTTGTCCTGGATCTTGGT-TTTGACGTTGTCAATCGTGTCCGAGGA 821994 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || | ||||| || || |||||||| || ||||| || || ||||| Sbjct 821993 CTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 821940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087698842390