Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12-
23] 61 sequences; 27,876,544 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq24 93.3 9e-14
>seq24
Length=1725410
Score = 93.3 bits (102), Expect = 9e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| |||||| |||| || ||||| || || |||| || | | ||||| ||
Sbjct 581501 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 581560
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | |||||| ||||||| | || || ||| |||||||||||||
Sbjct 581561 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 581620
Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015
|| || ||| |||| | || | ||||| |||||| || |||||||| ||| |
Sbjct 581621 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 581679
Query 218016 GGGTCTTCAG 218025
|||||| |||
Sbjct 581680 GGGTCTGCAG 581689
Score = 91.5 bits (100), Expect = 3e-13
Identities = 248/380 (65%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|| |||||| |||||||| | || || |||||| | || | ||| |||||||||
Sbjct 582185 GATTTCATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGCTCTATTCCC 582244
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
|| | ||||| | |||||| || || ||| || | || | ||||||||
Sbjct 582245 TCTGTAATTGATGGGTTTAAGCCAGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 582304
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
|| || || || || ||||||| || || ||||| || | || || |
Sbjct 582305 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGCGGTTACGTTGCTGAGCACTCGGCG 582364
Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757
|||||||||||||| |||| |||| || ||||| | ||| |||| || | | ||
Sbjct 582365 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATTATCGGCCTGGCGCAACAGTTCGTC 582424
Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817
|| |||||| | ||| | || ||| |||||||| |||||| | ||||| |||
Sbjct 582425 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTCTGCAAGGT 582484
Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877
|| || || ||||| || | || ||||| || || | || || | |||||
Sbjct 582485 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAACGTATCATCCATCACGCGTAGC 582544
Query 218878 GTGTTCAATCAGGCCGATGA 218897
|| ||| ||| || |||||
Sbjct 582545 GTCTTCCATCCCGCTGATGA 582564
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 698908 GCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 698849
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 698848 CCCGCATTGGGC 698837
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 739799 GCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 739858
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 739859 CCCGCATTGGGC 739870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835996681301
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |