Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq47 143 6e-29 seq10 114 3e-20 >seq47 Length=1359276 Score = 143 bits (158), Expect = 6e-29 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||||||||||||| || || || | || || || || ||| Sbjct 567895 TCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 567836 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 567835 ATCAATCGCTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 567779 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 567778 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 567719 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 567718 ACGAAGATCTGCAT 567705 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||||||||||||| || || || | || || || || ||| Sbjct 821674 TCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 821615 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 821614 ATCAATCGCTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 821558 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 821557 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 821498 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 821497 ACGAAGATTTGCAT 821484 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || ||||| | || || | || | ||| || || |||||||| || ||| Sbjct 568162 TGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCG 568103 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| || || || | || || || |||||||| ||||| ||||| ||| Sbjct 568102 GCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGG---TCT 568046 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || ||||| || || || || ||||| || || | || || Sbjct 568045 GGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGAC 567986 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 567985 TCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567933 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||||||||||||| || || || | || || || |||||| Sbjct 821446 TCCTTCTGGATGTTGTAATCGGCGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAG 821387 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 821386 ATGAGACGTTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 821330 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 821329 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 821270 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 821269 ACGAAGATTTGCAT 821256 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||||||||||||| || || || | || || || || ||| Sbjct 822130 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 822071 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 822070 ATCAATCGCTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 822014 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 822013 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 821954 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 821953 ACGAAGATTTGCAT 821940 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || || |||||| Sbjct 567703 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 567644 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||||| ||||| || |||||| Sbjct 567643 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGG---TCTGGG 567587 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || || || ||||| || || | || || || Sbjct 567586 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 567527 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 567526 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567477 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||||||||||||| || || || | || || || || ||| Sbjct 821902 TCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAG 821843 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| |||||| || || || || || ||||| || || || ||| Sbjct 821842 ATGAGACGTTGTTGG---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACG 821786 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 821785 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 821726 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 821725 ACGAAGATTTGCAT 821712 >seq10 Length=1963216 Score = 114 bits (126), Expect = 3e-20 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || || |||||||| || |||||||| Sbjct 1805562 CCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 1805621 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | ||||| || || || | || || || |||||||| ||||| || || ||||| Sbjct 1805622 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGG---TCTGGC 1805678 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || ||||| || | || ||||| || || | ||| ||| || Sbjct 1805679 GGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 1805738 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || ||||| ||||||||||| || || ||||||||||| || || ||| Sbjct 1805739 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 1805786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653478026358