Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq16 185 9e-42 seq47 152 5e-32 seq24 136 4e-27 seq10 131 2e-25 >seq16 Length=975364 Score = 185 bits (204), Expect = 9e-42 Identities = 175/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||||||||| ||||| ||||| || |||||| | ||| || || || ||| ||||| Sbjct 134493 GATTTGAAAACCGTAGAAGCATCGAGCCTCGGCTGACTGGACCTCACCAGAGAATCGCTC 134434 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || |||||||||||||||||| ||||||||||||||| || |||||| ||| Sbjct 134433 GACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGAT 134374 Query 133338 GAAATGGCGCTCGTTG---TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| | |||||||| | | | | | ||||||||| || |||||||||||| ||| Sbjct 134373 GAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTC 134314 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 || ||| ||| |||||||||| || |||||||| || |||||| Sbjct 134313 CATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCCTTCTTGTAC 134271 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| | ||||||||||||| || | ||||||||| | || ||||| |||||| Sbjct 135103 GAACAAGAGGCAAGCAAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATGAGCTCGTTGGA 135044 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998 ||| ||||| |||||||| | ||| || || |||||||| || |||| ||||| Sbjct 135043 GAAGGTCAATCCGGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAA 134990 >seq47 Length=1359276 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| |||| |||||| || | Sbjct 821256 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 821315 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 821316 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 821374 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 821375 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCGCCGATTACAA 821434 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||||||| || |||||||| ||| | |||| || Sbjct 821435 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGAGGAGG 821482 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| |||| |||||| || | Sbjct 821712 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 821771 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 821772 GACACGATTGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 821830 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | |||||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 821831 ACAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 821890 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||||||| || |||||||| ||| | |||| || Sbjct 821891 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGAGGAGG 821938 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| |||| |||||| || | Sbjct 821940 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 821999 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 822000 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 822058 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 822059 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAA 822118 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||||||| || |||||||||||| Sbjct 822119 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGT 822155 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| |||| |||||| || | Sbjct 567477 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567536 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| |||||| | ||||| Sbjct 567537 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 567595 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 567596 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 567655 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| |||||||| ||| | |||| || Sbjct 567656 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGTGG 567703 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| |||| |||||| || | Sbjct 821484 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 821543 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 821544 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 821602 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 821603 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAA 821662 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||||| || |||||||| ||| | |||| || Sbjct 821663 TATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGAGGAGG 821710 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| |||| |||||| || | Sbjct 567705 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567764 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 567765 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 567823 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 567824 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAA 567883 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||||| || |||||||| ||| | |||| || Sbjct 567884 TATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGAGGAGG 567931 >seq24 Length=1725410 Score = 136 bits (150), Expect = 4e-27 Identities = 163/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || ||||||||||| ||||||||| |||| |||||| | ||| Sbjct 1413596 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1413537 Query 38305 ACAGCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 ||| || | | | | |||| || |||| ||||| || || | ||||||| ||||| Sbjct 1413536 ACA-CGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCA-TCCCGCCAGACCA 1413479 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 1413478 GCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATTACAA 1413419 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| |||||||| |||| || || |||||||| || Sbjct 1413418 CATTCAAAAGGAGTCGACCCTCCACTTGGTGCTCCG 1413383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| |||||| | | || || ||| ||| | || ||||| | ||| ||||| Sbjct 330990 CAAATGACTGAACAAGAGGACGGCGAATTCGGTATGAAGACCTTCGTCGCGGGATATGAG 331049 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 |||||| ||||| | ||| ||||||||||| ||||||||||||||||| |||| ||| Sbjct 331050 CTCGTTGGAGAAAGAGAGGCCAGGCATGAGGCCTCGTTTTTTGAGCCAAAAGATGGAGGC 331109 Query 132996 GAA 132998 ||| Sbjct 331110 GAA 331112 >seq10 Length=1963216 Score = 131 bits (144), Expect = 2e-25 Identities = 169/228 (74%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 |||||| || || || || || |||||||| || |||||| |||| |||||| | |||| Sbjct 1805786 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 1805727 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCAA 38363 || || | | | | |||| || |||| ||||| || || || |||||| ||||| Sbjct 1805726 CA-CGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCAT-CCCGCCAGACCAG 1805669 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| ||||| ||||| || || | |||||| | |||||||||| Sbjct 1805668 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 1805609 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| |||| || |||||||| || || | |||| ||| Sbjct 1805608 ATCCAAAAGGAGTCGACCCTCCATTTGGTCCTCCGCCTCCGAGGTGGC 1805561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172418618240