Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28 176 6e-39 seq24 134 2e-26 seq29 120 4e-22 seq16 98.7 1e-15 >seq28 Length=749551 Score = 176 bits (194), Expect = 6e-39 Identities = 515/784 (66%), Gaps = 21/784 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| ||||| |||| || || ||| | || || || || Sbjct 3419 CCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATTCACGGGCACGACATCGAGCGCGT 3478 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | |||| || | |||||| | || || |||| Sbjct 3479 CTTGCAGTCGTACAACCTCATGTCCGAGCGGTACTTT-ACCCACGCCTCGCCGACGCTCT 3537 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||| | | | | ||||| | Sbjct 3538 TCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTTTCTTGGTCACGATGAAGGATG 3597 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| ||| | ||||| |||| ||| |||| || || | ||||| ||| || | Sbjct 3598 ATTCGATCGAAGGCATCTACGACACGCTCAAGACGTGCGCTCTCATCTCCAAGACCGCCG 3657 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 |||||||||| || |||||| | || | || | | | ||| || || || || Sbjct 3658 GTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACC--GGCTCCTACATTGCCGGCAC 3715 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || | || | || || | || ||||| || || | || ||| |||||||| Sbjct 3716 GAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAATAACACCGCGCGCTA 3775 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||||| | ||| | |||| |||| || ||||| || Sbjct 3776 CGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTG 3832 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | |||||||| || | || ||||| || | ||||| | || Sbjct 3833 GCACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCG 3892 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||| | || ||||||||||| |||||||||||| || | || ||| Sbjct 3893 CGCT--CGTGATCTCTTTTTGGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAG 3950 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | ||| | ||| | ||||| || || | | | || ||||||||| ||| | | Sbjct 3951 GCCGCCGGCGACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGTCTCCACGAAGTCTAT 4010 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || || ||||| | ||| | | | || ||||| | || |||| || | |||| Sbjct 4011 GGCGAAGAGTTCAAGGCCTTGTTCGAGAAATACGAAAAGGAGGGTCGCGCCAAGAAGACG 4070 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || |||||| || | || ||| ||||| | || Sbjct 4071 ATCCCCGC-GCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCC 4129 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| |||||| ||| | || || |||||||| | || ||| Sbjct 4130 CTTCATGCTCTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGAT 4189 Query 112379 CAAG 112382 |||| Sbjct 4190 CAAG 4193 >seq24 Length=1725410 Score = 134 bits (148), Expect = 2e-26 Identities = 237/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || ||||||||||| || || || |||| ||| ||| | |||||||||||| Sbjct 581793 TTGATGATCAGACCCTTGATATGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 581734 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 581733 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 581674 Query 176843 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTG-AGCTGTGTGACAGAGGCATCACGA 176899 | ||||| ||| ||||| ||| || ||| | | || | || | | || ||||| Sbjct 581673 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 581617 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || |||| || || | |||||||||||| |||| || ||||| || |||| Sbjct 581616 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 581557 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||||| Sbjct 581556 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 581497 Query 177020 --CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 177054 || | | | |||||| || ||||||||||| || Sbjct 581496 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 581462 >seq29 Length=1745553 Score = 120 bits (132), Expect = 4e-22 Identities = 269/396 (68%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| || |||| || || ||| Sbjct 71238 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGCCGTCCAGATCCCTCAATC 71297 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| |||||| |||| || ||| ||||||||| | ||| | || || Sbjct 71298 CGAGACGACGCCCTTCCACCCTCGTTCGCCATACGGAGTCGCCAAGTTGTACGCCTTCTG 71357 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| || || ||||||||| | |||| ||| || ||| ||| ||| | ||||| Sbjct 71358 GATCGTCAAAAACTACCGCGAGGCGTACGATATGTACGCGTGCAACGGTATCTTGTTCAA 71417 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTATC 13829 ||| || || ||| | || ||| ||| |||||| || | |||||| | ||||| | || Sbjct 71418 CCACGAGTCCCCGCGTCGTGGTCGCAC-CTTTGTCACAAGGAAGATCTCCCGAGC-TGTC 71475 Query 13830 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 13889 | ||| | ||| || |||| | | | | | || || || | || || | Sbjct 71476 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGT 71535 Query 13890 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 13949 |||||||| |||||| ||||| || || | ||||||| ||||| || ||||| || Sbjct 71536 GATTGGGGACACGCGTGCGACTACGTCGAGGGTATGTGGAGGATGCTGCAGCAAGAC-AA 71594 Query 13950 GCC-GACGAATATGTAGTAGCAACGGGTGAGACCCA 13984 ||| ||||| | ||| | || |||||||||||||| Sbjct 71595 GCCTGACGACTTTGTCCTCGCGACGGGTGAGACCCA 71630 >seq16 Length=975364 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || ||||| ||| | || || Sbjct 316887 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 316828 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 316827 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 316768 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 316767 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 316708 Query 13772 CCATGAATCACC 13783 ||| || || || Sbjct 316707 CCACGAGTCCCC 316696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741926683920