Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28 168 8e-37 seq29 138 1e-27 seq16 107 2e-18 seq24 87.8 2e-12 >seq28 Length=749551 Score = 168 bits (186), Expect = 8e-37 Identities = 550/849 (65%), Gaps = 13/849 (2%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| || || ||| ||| | | |||||| | || || Sbjct 4270 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 4211 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || ||||| || || ||| ||||| || | ||||||||||| || ||||| Sbjct 4210 GTGCACAAATTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCG 4151 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || ||||||||||||||| |||| | || || || ||| | || ||||||||| | | Sbjct 4150 GCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAGAATTGCGTAC 4091 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | || || || | | ||||| || |||||| ||||| || | | Sbjct 4090 CAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCGCGACCCTCCTTTTCGTATTTCTCGAA 4032 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 | ||| | ||||| || || | ||| |||||| || || | | | || ||||| Sbjct 4031 CAAGGCCTTGAACTCTTCGCCATAGACTTCGTGGAGACCGGGGGCTTCGGCGGGGCAGAA 3972 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 || | ||| | || | |||| || |||| |||||| || || |||||||| || | Sbjct 3971 GAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGCGC 3912 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 |||||||||| | | || | || || | || ||||| || | || ||||| Sbjct 3911 CAAAAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 3852 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 ||| | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 3851 CTCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCTT 3795 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | || |||||||| ||| || | || || ||||| || | || Sbjct 3794 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGGGGACGAT 3735 Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055 || | || | || || || || ||| || | || | | | ||||| Sbjct 3734 GCCGTTCGAGTAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGTTGTGGAT 3675 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 | || || ||||| || || ||| ||||| | || ||| | | || || | || Sbjct 3674 GCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTGAGCGTGTCGTA 3615 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 ||| || | ||| || || ||||| | | || | ||| || || | |||||| Sbjct 3614 GATGCCTTCGATCGAATCATCCTTCATCGTGACCAAGAAACACGACGAAAGCTGCGGGTG 3555 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC-TTGGGACATCT 107234 || || || || |||||||| || || | ||||| | || |||| | |||||| Sbjct 3554 AGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGT-AAAGTACCGCTCGGACATGA 3496 Query 107235 TGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCA 107294 || ||| | || |||||| || ||||| | |||||| ||||||| ||| ||||||| Sbjct 3495 GGTTGTACGACTGCAAGACGCGCTCGATGTCGTGCCCGTGAATGCCGACGGCGACACGCA 3436 Query 107295 TAAACATGT 107303 | | ||||| Sbjct 3435 TGAGCATGT 3427 >seq29 Length=1745553 Score = 138 bits (152), Expect = 1e-27 Identities = 273/396 (69%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| |||||||| | || ||| ||| || |||| || || ||| Sbjct 71238 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGCCGTCCAGATCCCTCAATC 71297 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| |||||| |||| || ||| ||||||||| | ||| | || || Sbjct 71298 CGAGACGACGCCCTTCCACCCTCGTTCGCCATACGGAGTCGCCAAGTTGTACGCCTTCTG 71357 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | |||||||||| ||||||||| | |||| ||| |||||| ||| ||| | ||||| Sbjct 71358 GATCGTCAAAAACTACCGCGAGGCGTACGATATGTACGCGTGCAACGGTATCTTGTTCAA 71417 Query 7079 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATC 7136 ||| || || ||| | || ||| ||| ||||||||||| |||||| | |||| | | || Sbjct 71418 CCACGAGTCCCCGCGTCGTGGTCGCAC-CTTTGTCACAAGGAAGATCTCCCGA-GCTGTC 71475 Query 7137 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 7196 | ||| | ||| || |||| | | | | | || || || | || || | Sbjct 71476 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGT 71535 Query 7197 GATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAA 7256 |||||||| |||||| ||||| || || | |||||| ||||| || ||||| || Sbjct 71536 GATTGGGGACACGCGTGCGACTACGTCGAGGGTATGTGGAGGATGCTGCAGCAAGA-CAA 71594 Query 7257 GCC-GACGAATATGTAGTAGCAACGGGTGAGACCCA 7291 ||| ||||| | ||| | || |||||||||||||| Sbjct 71595 GCCTGACGACTTTGTCCTCGCGACGGGTGAGACCCA 71630 >seq16 Length=975364 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 316887 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 316828 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 316827 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 316768 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 316767 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 316708 Query 7079 CCATGAATCACC 7090 ||| || || || Sbjct 316707 CCACGAGTCCCC 316696 >seq24 Length=1725410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 228/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| ||||||||||| || || ||||| | ||| ||| | ||| ||||| || || Sbjct 581788 GATCAGACCCTTGATATGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCC 581729 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || ||| |||| || || || ||||||||||||| ||| Sbjct 581728 GTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTT 581669 Query 169298 GAGATCG-TTGAACTCTTGG----TTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352 ||||| ||||| ||| || | || | | ||| ||| | | || || || || Sbjct 581668 --GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGC--CCGCCGCTTCACGCACG 581614 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 || |||| || || | ||| ||||| ||||||| || || || ||||| | ||| Sbjct 581613 TTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCCAGA 581554 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT--TC 169470 |||| ||| || || | || || ||||| || || || | ||||| || ||||| | Sbjct 581553 CCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTGGAC 581494 Query 169471 CAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTG 169511 | | | | |||||| || ||||| || || || | |||| Sbjct 581493 CCG--TTCCTCGTACCAGCGTTGTTCGCATCTTCGAGCTTG 581455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980350139640