Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq24 105 5e-18 seq47 104 2e-17 >seq24 Length=1725410 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || ||||| || ||||||||||||| ||| | | |||| || Sbjct 1413389 ACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAATCGGCGAGAGTGCGGCCATCCTCG 1413448 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | ||| || || || ||||| |||||||| || ||||| Sbjct 1413449 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 1413508 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| |||| || || || || |||| || ||| Sbjct 1413509 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 1413568 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCA 101468 || || | || || ||||| || |||| Sbjct 1413569 CCCGTGAGGGTCTTGACAAAGATTTGCA 1413596 >seq47 Length=1359276 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || || || || || || || || || || |||||||||||| Sbjct 821938 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 821879 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| || | ||| ||||| || || ||| Sbjct 821878 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGA 821819 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || ||||| || || || || | || | ||||| || | || || Sbjct 821818 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGACC 821759 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||| |||||||| | || || || || || ||||| Sbjct 821758 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 821712 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| |||| | ||| | || || || || || || || || || |||||||||||||| Sbjct 568160 TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGC 568101 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 || || | | |||| || | ||||| || || || || | ||| ||||| || || || Sbjct 568100 GAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGG 568041 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 |||||| || || || ||||| || || || | || | ||||| || | || || Sbjct 568040 AATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 567981 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||| |||||||| | || || || || || ||||| Sbjct 567980 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567933 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || || || || || || || || || || |||||||||||| Sbjct 567703 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 567644 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || ||||| ||||| || || || ||| Sbjct 567643 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 567584 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || ||||| || || || | || | ||||| || | || || Sbjct 567583 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 567524 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||| |||||||| | || || || || || ||||| Sbjct 567523 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || || || || || || || || || || |||||||||||| Sbjct 821482 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 821423 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || || || || | ||| ||||| || || ||| Sbjct 821422 AGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 821363 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || ||| || | || | ||||| || | || || Sbjct 821362 ATACCCTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCAATCGTGTCCGAGGACTCGACC 821303 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||| |||||||| | || || || || || ||||| Sbjct 821302 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 821256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278105391777