Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28 159 6e-34 seq24 105 1e-17 >seq28 Length=749551 Score = 159 bits (176), Expect = 6e-34 Identities = 778/1229 (63%), Gaps = 28/1229 (2%) Strand=Plus/Minus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||| ||||| |||| || | || |||| ||||||||| || || || | | ||||| Sbjct 4558 GCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTG 4499 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 ||||| ||||| || || ||| |||||| || | |||| | || || || Sbjct 4498 AGCTTGCGCGCCTCGGGCGAATCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCTAGA 4439 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 || || || |||||||||||||| | ||| | | ||| || || | || ||| | Sbjct 4438 CCTTGCACTCCGATGCCGATGGGGCGGTGACGGAAGTTGGAGTTCTGCGC-CTCGATGAC 4380 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||| || ||||| ||||||||| ||| | |||| | | | || ||| ||| | Sbjct 4379 GGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGACAACCTTGACGACCTC 4320 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAA-CTCAGGCAGGGCGA 213489 | || | || | || |||| | |||| || | || ||| |||| |||| Sbjct 4319 GTGCAACTTCT------TAAAGTCGTACACGCCGTTCTTGATGAAGCTC-GGCAACGCGA 4267 Query 213490 TGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGC 213549 | ||||| |||||| ||||| ||| | | | | |||||| ||||||||||||| Sbjct 4266 TCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGC 4207 Query 213550 ACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAAT 213609 ||| || | ||| ||||| ||||||| ||||| || || ||| || | | Sbjct 4206 ACAAATTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCGGCGT 4147 Query 213610 CCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGA 213669 |||||||||||||| ||||| || || || | ||||| | | || || | ||| | Sbjct 4146 CCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAGAATTGCGTACCAAA 4087 Query 213670 GGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGA 213729 | | || || | | | || | || | | ||||| | ||| | | Sbjct 4086 GCTTTTGCGCGGGGATCGTCTTCTTGGCGCGACCCTCCTTT---TCGTATTTCTCGAACA 4030 Query 213730 GCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGAT---GCGGGACACA 213786 | ||||| || | ||| |||| || || || || || | ||||| || | Sbjct 4029 AGGCCTTGAACTCTTCGCCATAGACTTCGTGGAGACCGGG---GGCTTCGGCGGGGCAGA 3973 Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 |||| |||||| ||| | | ||| | || |||||| || || || | ||| |||| Sbjct 3972 AGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGCG 3913 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 | || || || | | | || ||| || ||| ||||| || || || | Sbjct 3912 CCAAAAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 3853 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCT 213963 | || |||| ||| |||||||||||||| | |||||| || ||||| || | || | | Sbjct 3852 ACTCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGT 3793 Query 213964 TGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 |||| || ||||| || | || | ||| ||| || || | ||| || | | Sbjct 3792 TGCCACCTTGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGGGGACGATGC 3733 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGG 214083 |||| || | ||||| || || || || || ||||||| || | | |||| ||| Sbjct 3732 CGTTCGAGTAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGC 3673 Query 214084 AGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGA 214143 | || || ||||||||| ||||||||| | ||||| | | | || || || Sbjct 3672 TCAAACCGATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTGAGCGTGTCGTAGA 3613 Query 214144 TGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGG 214203 |||| | || ||||| | | | | |||||| || ||| ||||| || | Sbjct 3612 TGCCTTCGATCGAATCATCCTTCATCGTGACCAAGAAACACGACGAAAGCTGCGGGTGAG 3553 Query 214204 ACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCC 214263 || || | |||||| ||||| || ||| ||| | | || | || | ||| Sbjct 3552 GCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTACCGCTCGGACATGAGGT 3493 Query 214264 TGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCA 214323 |||| | || || ||| |||||||||| ||| || | ||| | ||| | Sbjct 3492 TGTACGACTGCAAGACGCGCTCGATGTCGTGCCCGTGAATGCCGACGGCGACACGCATGA 3433 Query 214324 GCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG---AGCAGGTAGGAGCGCT 214380 |||||||||| || | || || | ||| | | || |||| ||||||||||| Sbjct 3432 GCATGTGCTGCGGGCGTTC---GGCGACCTTGCCGTCAATGCGAAGCAAGTAGGAGCGCT 3376 Query 214381 CCAGAGTCTTGAACCCAAAGTAGGAGTAG 214409 | || || ||||| ||||||||| |||| Sbjct 3375 CGAGCGTTTTGAAGCCAAAGTAGTTGTAG 3347 >seq24 Length=1725410 Score = 105 bits (116), Expect = 1e-17 Identities = 164/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 |||||| || || || ||| ||| ||||| | |||||| || | ||||| ||||| Sbjct 331573 GATCTGAAAGCCATAAAAGCACCTCGCCTCGGCGAACTGCACCTCACTTGAGAACCTCTC 331632 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 | || |||||||| || | |||||||||||| || |||||||| || || || | Sbjct 331633 AACCAAGTTCTCATTCACGACCCCATCTGAAGCGGCGAAGAAGGCGAGCACGTGGGCGAT 331692 Query 48574 GAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTC 48630 || | ||| |||| || | |||| | |||| | || | ||| |||| ||||| Sbjct 331693 AAAGTAGCGTTCGTCGTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGCTGCCGAGGTC 331752 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 | ||||| | | ||| |||||||| | |||| |||||||||| |||| || Sbjct 331753 GATCTCTTCGGCGGACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAAT 331806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532089706240