Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28 226 3e-53 seq47 105 8e-17 seq31 100 3e-15 >seq28 Length=749551 Score = 226 bits (250), Expect = 3e-53 Identities = 335/471 (71%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| || |||| ||||||||||| |||| |||||| || Sbjct 3784 TGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 3725 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 3724 TAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 3665 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | |||||||||||| |||||| |||||||||||||||||||| ||| Sbjct 3664 ATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 3605 Query 1630246 ATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||| || ||||||| || | ||||| |||||||| |||||||| | ||| || Sbjct 3604 ATCGAATCATCCTTCATCGTGACCAAGAAA-CACGACGAAAGCTGCGGGTGAGGCGTTCC 3546 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GG 1630363 ||||||||||||||| |||| || ||| || || || |||||| || ||| | Sbjct 3545 GGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTACCGCTCGGACATGAGGTTGTACGA 3486 Query 1630364 TGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGA 1630423 || || |||||| || | |||| ||| | ||||| ||||| Sbjct 3485 CTGCAAG-ACGCGC------------TCGATGTCG---TGCCCGTGAATGCCGACGGCGA 3442 Query 1630424 CGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGG 1630483 | ||||||||||||| ||| || || ||| |||| |||| | || ||||| Sbjct 3441 CACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCAATGCGAAGCAAGTAGG 3382 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | || ||| |||||||||| || | ||||||||||||| Sbjct 3381 AGCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 3331 Score = 143 bits (158), Expect = 3e-28 Identities = 298/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || |||||||||||||| || | |||| | |||| || |||||| Sbjct 4234 GGCGCCGAGTACTCGATGATCTCGGTGCACAAATTCGACGACTTGATCGTGCCAAGGTTC 4175 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | || ||| |||||||||||| ||||||| |||| ||| || ||| Sbjct 4174 TTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCG 4115 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCG 1628330 | ||| ||| ||| || || |||| | || ||||||| | || | || ||||| Sbjct 4114 ACCTGGGCCTCGAGAATTGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGCG 4056 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 |||| | || | |||| ||| ||||| || Sbjct 4055 ACCCTCCTTTTCGTATTTCTCGAACAAGGCCTTGAACTCTTCGCCATAGACTTCGTGGAG 3996 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 ||||| || |||| || || ||||| | ||||||||| ||| | | | || ||| Sbjct 3995 ACCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCAT 3936 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 ||||| || |||| || || ||||||| || || || ||| ||||||||||| Sbjct 3935 GAAGAGATCGGGAATCCAGAGCGCCAAAAAGAGATCACGAGCGCGGACTTCCTCCTTGCC 3876 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 ||||||||| ||||| || | |||| | ||| |||||||||||||| |||||| Sbjct 3875 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGAT 3816 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 3815 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 3786 Score = 116 bits (128), Expect = 5e-20 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || |||||| | ||||||| |||||||| || Sbjct 5384 TGGTCGACGGTGAACTTGATTGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATACCC 5325 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || || ||| ||||| |||||||||||||| || | ||||| | Sbjct 5324 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCGTCGGG 5265 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||| | ||| | |||||||||| Sbjct 5264 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCAATGAAGGCACCTCGATCGGCCGA 5206 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 5205 CAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 5147 Query 1627220 CG 1627221 || Sbjct 5146 CG 5145 >seq47 Length=1359276 Score = 105 bits (116), Expect = 8e-17 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| |||||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 310880 ATCGGTGGCACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 310821 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 310820 -TTCGACAAGCTGGAAGCCCTTTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 310762 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 310761 CTTTGAGATTGG 310750 Score = 96.9 bits (106), Expect = 4e-14 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| |||| |||| | || || || || | Sbjct 404721 TCGACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAGAAGGTCACACTCCCACCGG 404780 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||||| | || ||| |||||||| | Sbjct 404781 GTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGAGCCCAGCAAG 404840 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 404841 CGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACC 404900 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | | |||| ||| | | || ||||| |||||||| Sbjct 404901 AGAGCAACAAGATCATTGAGCCGATTCAGAGTCGATGCGCCAT 404943 >seq31 Length=1942871 Score = 100 bits (110), Expect = 3e-15 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1367960 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1367901 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | || ||| | | ||| || | || ||| | ||||||| |||| | Sbjct 1367900 TGGTCAATCTCTGGTTGTATTTCGCGAGTTTGGACGCTTCGAGGGCGATGCGCTCGAAGA 1367841 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| |||||||| | || | ||||| |||||| || || || |||||||| Sbjct 1367840 TGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAAATACCGGTGTCGGGGT 1367781 Query 1254523 GCACCTGCTTGAGCACCTTG 1254542 | || ||||| | ||||||| Sbjct 1367780 GGACTTGCTTCAACACCTTG 1367761 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | |||||||||||||||| || Sbjct 311352 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAAGTCTGGATCTCGCGCGACGTGA 311293 Query 1254403 TCGTGTTGCGCTTGTTCGAGT---GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| || |||||| || |||| || | |||||| || |||||| || | Sbjct 311292 TCGTC--GC-CTTGTTATTGTATAGCGCGAGCTTGGACGCCTCGATGGAGATGCGCTCAA 311236 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 311235 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCGG 311176 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||| | | ||| ||| Sbjct 311175 GGTGAACTTGCCTCAACACTTTG 311153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134194054337