Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq28 190 3e-42 seq16 122 1e-21 seq31 118 2e-20 seq24 111 2e-18 >seq28 Length=749551 Score = 190 bits (210), Expect = 3e-42 Identities = 201/262 (77%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| || |||| ||||||||||| || | |||||| || Sbjct 3784 TGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 3725 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 3724 TAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 3665 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | |||||||||||| |||||| | || ||||| ||||||||||| ||| Sbjct 3664 ATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 3605 Query 2073721 ATCGAGTCGGCCTTCAT---GTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 ||||| || ||||||| | |||| |||| |||||||| |||||| | | ||| Sbjct 3604 ATCGAATCATCCTTCATCGTGACCAA--GAAA-CACGACGAAAGCTGCGGGTGAGGCGTT 3548 Query 2073778 CCGGCATTGAAGAGCGTGGGCG 2073799 ||||| ||||||||||| |||| Sbjct 3547 CCGGCGTTGAAGAGCGTCGGCG 3526 Score = 154 bits (170), Expect = 2e-31 Identities = 300/449 (67%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||| || | |||| | | ||||| |||||| Sbjct 4234 GGCGCCGAGTACTCGATGATCTCGGTGCACAAATTCGACGACTTGATCGTGCCAAGGTTC 4175 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| || ||| |||||||||||| |||||| |||| || || ||| Sbjct 4174 TTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCG 4115 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| ||| || || || |||||| | ||||||| | || || | ||||| Sbjct 4114 ACCTGGGCCTCGAGAATTGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCGA 4055 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | | ||| | || | |||| | | ||||| || Sbjct 4054 CCCTCCTTTTCGTATTTCTCGAACAAGGCCTTGAACTCTTCGCCATAGACTTCGTGGAGA 3995 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || |||| ||||| ||||| | |||||||||| | | | | || || ||| Sbjct 3994 CCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATG 3935 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 || || ||| |||| || | |||||||||| || || ||| |||||||||||| Sbjct 3934 AAGAGATCGGGAATCCAGAGCGCCAAAAAGAGATCACGAGCGCGGACTTCCTCCTTGCCG 3875 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || ||| |||||||||||||| |||||| Sbjct 3874 TGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATC 3815 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 3814 GCGAAGGCTCCGGGACGCTTGTTGCCACC 3786 Score = 105 bits (116), Expect = 1e-16 Identities = 173/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || | |||| | || ||||||| |||||||| || Sbjct 5384 TGGTCGACGGTGAACTTGATTGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATACCC 5325 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| || || || ||| ||||| |||||||||||||| | || ||| ||| Sbjct 5324 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GCTGCGCCATCGTCG 5267 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||| | ||| | || |||||| Sbjct 5266 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCAATGAAGGCACCTCGATCGGCC 5208 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || ||||| | | | ||| || | |||||| ||||||||| | | ||||||||| Sbjct 5207 GACAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAG 5149 Query 2069487 AT 2069488 || Sbjct 5148 AT 5147 Score = 89.7 bits (98), Expect = 8e-12 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| ||||| ||| | Sbjct 4535 CGCGGCGTGGTAGATGGTCTCGAAGATT-TGCTTGTTGAGCTTGCGCGCCTCGGGCGAAT 4477 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 4476 CGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCTAGACCTTGCACTCCGATGCCGAT 4419 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || ||||| || | ||| |||| | | |||||| || || |||| ||||| |||||| Sbjct 4418 GGGGCGGTGACGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 4359 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 4358 GATGCGGTTCAAGTTG 4343 >seq16 Length=975364 Score = 122 bits (134), Expect = 1e-21 Identities = 146/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| ||| || || ||| |||||| ||||||||| Sbjct 134468 GCCTCGGCTGACTGGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACGATGCCG 134409 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 134408 TCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGC 134349 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | |||| | | ||| | ||| ||||||||||||||||| Sbjct 134348 TTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGTCCAAAAGGAT 134289 Query 796327 GCCTCGGCCTTTTTGTAC 796344 ||||||||||| |||||| Sbjct 134288 GCCTCGGCCTTCTTGTAC 134271 >seq31 Length=1942871 Score = 118 bits (130), Expect = 2e-20 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 311376 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCG 311317 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC---GCGCCAGGCGGC 1485601 |||||||||||||| | |||||| || ||||||| || |||| || | Sbjct 311316 AAGTCTGGATCTCGCGCGACGTGATCGTC--GC-CTTGTTATTGTATAGCGCGAGCTTGG 311260 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| || |||||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 311259 ACGCCTCGATGGAGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 311200 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || ||| | | ||| ||| Sbjct 311199 CCTTGTTCGAGATACCCGTGTCGGGGTGAACTTGCCTCAACACTTTG 311153 Score = 109 bits (120), Expect = 9e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 1367984 CCTTCGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 1367925 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGCGCGCCAGGCGGCC 1485602 ||||||||||||||| | ||| || | || ||| | | |||| || | Sbjct 1367924 AGGTCTGGATCTCGCGCGACGAGATGGTCAATCTCTGGTTGTATTTCGCG--AGTTTGGA 1367867 Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 || ||| | ||||||| |||| ||||||||||| |||||||| | |||| ||||| Sbjct 1367866 CGCTTCGAGGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGC 1367807 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| || || || ||||||||| || ||||| | ||||||| Sbjct 1367806 CTTGTTCGAAATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 1367761 >seq24 Length=1725410 Score = 111 bits (122), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTC-CTTCATGAAGCGGCCGGCCAGGTTCTCAG 796198 ||| ||||| ||||||| | || ||||| ||| | ||| | | ||| ||||||| Sbjct 331588 AAAGCACCTCGCCTCGGCGAACTGCACCTCACTTGA-GAACCTCTCAACCAAGTTCTCAT 331646 Query 796199 CCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGT 796258 ||||| || || |||||||| |||||||| ||||| |||||||| || |||| Sbjct 331647 TCACGACCCCATCTGAAGCGGCGAAGAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCGT 331706 Query 796259 CGTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 331707 CGTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGCTGCCGAGGTCGATCTCTTCGGCGG 331766 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 331767 ACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAATC 331807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916239911151779