Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq28 212 9e-49 seq16 111 2e-18 seq31 98.7 1e-14 >seq28 Length=749551 Score = 212 bits (234), Expect = 9e-49 Identities = 287/396 (72%), Gaps = 23/396 (6%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| ||| || || ||| | |||||||||||||||||| | ||| | | ||| Sbjct 3408 GTCGCCGAACGCCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATTCACGGGCA---- 3463 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACC-TACGAGGCCATGTCGCAGCAGTT 259908 ||||| | |||| ||| || || | ||| | |||||| ||| || Sbjct 3464 -----CGACA------TCGAGCGCGT-CTTGCAGTCGTACAACCTCATGTCCGAGCGGTA 3511 Query 259909 GTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTC 259968 || ||| || |||| |||||||| || ||||| ||||| | ||||||| |||||| Sbjct 3512 CTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTC 3571 Query 259969 GTGCTTTCTGTTGGACA---TGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAA 260025 ||| ||||| ||| || |||||| ||||||||||| |||||||| ||||||||||| Sbjct 3572 GTG-TTTCT--TGGTCACGATGAAGGATGATTCGATCGAAGGCATCTACGACACGCTCAA 3628 Query 260026 GCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCG 260085 | |||||| |||||||||||| | ||||| || |||||||| | ||||| | || Sbjct 3629 GACGTGCGCTCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCG 3688 Query 260086 CGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCT 260145 ||| | ||| ||||| | || ||||| |||||| | || |||||| | || |||||||| Sbjct 3689 CGCGACCGGCTCCTACATTGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCT 3748 Query 260146 TCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || || | || |||| ||||||||||||||||| Sbjct 3749 CCGTGTCTACAATAACACCGCGCGCTACGTCGACCA 3784 Score = 123 bits (136), Expect = 4e-22 Identities = 299/456 (66%), Gaps = 8/456 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||| ||| || Sbjct 3786 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTC 3845 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 3846 TTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 3899 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||||| | || |||| ||| || || ||| || | | | ||| | || Sbjct 3900 GATCTCTTTTTGGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGC 3959 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | ||||| ||||| |||| || ||||| || |||||| |||||||| | Sbjct 3960 GACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGTCTCCACGAAGTCTATGGCGAAGAG 4019 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 || | ||| | | ||| | || | || | ||||| Sbjct 4020 TTCAAGGCCTTGTTCGAGAAATACGAAAAGGAGGGTCGCGCCAAGA-AGACGATCCCCGC 4078 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || ||| ||| |||||| |||| || |||| |||| |||| | Sbjct 4079 GCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCT 4138 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC 262206 |||||||||||||| ||| || ||||| ||||||| ||||| | | | | Sbjct 4139 CTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTC 4198 Query 262207 CAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCC 262242 || |||||||||||||| || ||| ||| |||| Sbjct 4199 GAATTTGTGCACCGAGATCATCGAGTACTCGGCGCC 4234 Score = 93.3 bits (102), Expect = 6e-13 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 5145 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 5203 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| | |||||| || ||||||||| | || | | || Sbjct 5204 TGTCGGCCGATCGAGGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 5262 Query 263291 A-CCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 | ||||||| | | ||| |||||||||||||| ||| | ||| || || || || Sbjct 5263 AGCCCGACGATGGCGCAGC-TCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAA 5321 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| || |||||||| ||||||| || |||| | | || || | ||||||||||| Sbjct 5322 GACGGGTATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCAATCAAGTTCACCGTCGA 5381 Query 263409 TCA 263411 || Sbjct 5382 CCA 5384 >seq16 Length=975364 Score = 111 bits (122), Expect = 2e-18 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 134259 GATCTGGGCACAGTAC-AAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 134317 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 134318 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 134377 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||| |||||||||||| ||| |||||||| ||||||| ||| || Sbjct 134378 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 134436 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 134437 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 134493 >seq31 Length=1942871 Score = 98.7 bits (108), Expect = 1e-14 Identities = 160/227 (70%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | || || |||||| | ||| Sbjct 1367761 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATT-TCGAACAAGGCGATGCT 1367814 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC-- 725033 |||| | |||||||| ||||||||||| |||| ||||||| | ||| || ||| Sbjct 1367815 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCCTCGAAGC--GTCCAAA 1367872 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || ||| | |||| || | || ||| ||||||||||||||||| | || || Sbjct 1367873 CTCGCGAAATACAACCAGAGATTGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCCGA 1367932 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1367933 TTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1367979 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| | || |||||| Sbjct 311189 CTCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCTC 311248 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073 || |||||| ||| | || ||| | | |||| ||| |||||| |||||| Sbjct 311249 CATCGAGGC--GTC--CAAGCTCGCGCTATACAATAACAAGGCGACGATCACGTCGCGCG 311304 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 311305 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 311364 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 311365 AAGGCACCA 311373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177805316437882