Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq10 127 2e-24 seq47 125 7e-24 seq24 125 7e-24 seq28 87.8 2e-12 >seq10 Length=1963216 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || | || || || || |||||||| |||||||||||| | Sbjct 1805562 CCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 1805621 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| || || || | ||| ||||| || ||||| Sbjct 1805622 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGG 1805681 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| ||| | ||||||||||| || || Sbjct 1805682 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 1805741 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711 ||||| || || || || || || | ||| || || || |||||| Sbjct 1805742 TCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 1805786 >seq47 Length=1359276 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| | ||| ||||| || ||||| || |||||||||||| | Sbjct 822166 CCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 822107 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| ||||| ||||| ||||| || || || || Sbjct 822106 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 822047 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || |||||| ||| | ||||| || || || || Sbjct 822046 ATACCCTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCAATCGTGTCCGAGGACTCGACC 821987 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| | || || ||||| |||||||| Sbjct 821986 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 821940 >seq24 Length=1725410 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||||||||||||||| ||| | | ||| | Sbjct 1413380 AGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAATCGGCGAGAGTGCGG 1413439 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || || | ||| ||||| || ||||| |||||||| Sbjct 1413440 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCC 1413499 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| ||| | ||||||||||| || || ||||| || Sbjct 1413500 TTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTG 1413559 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 ||||| || || || | || || || || ||||||| Sbjct 1413560 ATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 1413596 >seq28 Length=749551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 332/517 (64%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 7472 ACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGT 7531 |||| ||||||| || ||| || |||| | | ||||| | | | ||||||| Sbjct 3331 ACGACCGCGATTTCGGCTACAACTACTTTGGCTTCAAAACGCTCGAGCGCTCCTACTTGC 3390 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 | || ||||| | ||| ||||| || |||||||| |||| || || || | Sbjct 3391 TTCGCATTGACGGCAAGGTCGCCGAACGCCCGCAGCACATGCTCATGCGTGTCGCCGTCG 3450 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 |||||||||| | ||||| || || |||| | ||||| | | ||||| | Sbjct 3451 GCATTCACGGGCACGACATCGAGCGCGTCTTGCAGTCGTACAACCTCATGTCCGAGCGGT 3510 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGC----GCCTCAATTG 7707 | ||||| ||||| ||||| || | || ||| || ||||| || || | Sbjct 3511 ACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGG----AACGCCTCACCCGCAGCTT 3566 Query 7708 TCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTG 7767 || |||||||| ||| | || ||| || || ||||| ||||| ||| ||||||| Sbjct 3567 TCGTCGTGTTTCTTGGTCACGATGAAGGATGATTCGATCGAAGGCATCTACGACACGCT- 3625 Query 7768 CGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGT 7826 | || ||||| || ||||| || ||| || || ||| ||| | | || || | Sbjct 3626 CAAGACGTGCGCTCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACAT 3685 Query 7827 GCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCAT 7886 ||||| | ||| | ||| | ||| ||||| | | | ||| | | ||||| Sbjct 3686 CCGCGCGACCGGCTCCTACATTGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCAT 3745 Query 7887 GTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGG 7943 | | || || | ||||||| | | ||| | || ||||| || || ||||| || Sbjct 3746 GCTCCGTGTCTACAATAACACCGCGCGCTACGTCGACCAAGGTGGCAACAAGCGTCCCGG 3805 Query 7944 CGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980 ||| || ||||| | |||||||||||||| ||| Sbjct 3806 AGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGAC 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398014633720