Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq34 114 4e-20 seq47 104 7e-17 seq24 104 7e-17 seq10 96.9 1e-14 >seq34 Length=2291677 Score = 114 bits (126), Expect = 4e-20 Identities = 702/1125 (62%), Gaps = 2/1125 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||||| || || ||| | | | || |||||||| | ||||| || || | Sbjct 1814527 CCCGAGGAAATCTCGTCCATGATCCTGCTCAAGATGAAGGAGACCGCTGAGGCCTACCTG 1814586 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || || | | || || | ||||| || ||||| || || ||| | ||||| Sbjct 1814587 GGCACGACCGTCTCCAACGCCGTCGTCACTGTCCCCGCCTACTTCAACGATTCGCAGCGA 1814646 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || ||| |||| | || || || | || ||||| || Sbjct 1814647 CAAGCCACCAAGGATGCCGGTGTCATCTCGGGCCTCAACGTCCTCCGTATTATTAACGAG 1814706 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||||||||| || || || || || || || || | || | || || || | Sbjct 1814707 CCCACTGCTGCCGCCATCGCTTACGGCCTCGACAAGAAGACCGTTGGCGAGAAGAACGTC 1814766 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | || || || || || ||||| || || | || |||| ||||| Sbjct 1814767 CTCATCTTCGATCTCGGAGGAGGAACGTTCGATGTCTCCCTTTTGACCATTGAGGAGGGT 1814826 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || ||||| || || | || || || || || || || Sbjct 1814827 ATCTTCGAGGTCAAGGCCACCGCCGGTGACACCCACTTGGGAGGTGAGGACTTCGACAAC 1814886 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 || ||||| | || || || || || ||||| |||| || | ||| | Sbjct 1814887 CGACTCGTCACTCACTTCGTCGCCGAGTTCAAGCG-CAAGAACAAGAAAGATCTCTCGTC 1814945 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || | | || | ||||| || | ||||| || || ||||| ||||| || | || Sbjct 1814946 CAACGCCCGTGCTCTCCGTCGTCTCCGCACTGCCTGCGAGCGTGCCAAGCGAACCCTCTC 1815005 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | |||| || | || || || || || || || || | || |||| | Sbjct 1815006 TTCCGCCGCCCAGACTACCATCGAGATCGACTCGCTCTTCGAGGGTATCGACTTCTACAC 1815065 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || |||||||| || || || || || || | || | | || ||||| Sbjct 1815066 CTCCATCACTCGTGCTCGCTTCGAGGAGTTGTGCCAAGACTTGTTCCGTGGCACCATGGA 1815125 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 || || || || || | ||| | || || ||| | | | || | || Sbjct 1815126 CCCCGTCGAGAAGGTCCTTCGCGATTCCAAGATCGACAAGGCTTCCGTCCACGAGATCGT 1815185 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | |||||||| || || ||||| || || || || | | | || || | || || Sbjct 1815186 CCTCGTTGGTGGCTCCACTCGTATCCCCAAGGTCCAGAAACTCGTCTCGGACTACTTCAA 1815245 Query 350251 TGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGT 350310 ||||| || ||| | || || || || ||||| || ||||| || ||||| ||||| Sbjct 1815246 CGGCAAGGAGCCTAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCCGCTGT 1815305 Query 350311 TCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGA 350370 ||||| | || | |||| | | | | || | | || | | | || || Sbjct 1815306 CCAGGCCGCCATCCTCACTGGTGACACGTCTGAGAAGACCCAGGACTTGCTCTTGCTCGA 1815365 Query 350371 TGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCC 350430 ||| | || |||||| || | || || | |||| || ||||| || || || Sbjct 1815366 TGTCGCCCCGCTTTCGACCGGTATCGAGACCGCCGGTGGTGTCATGACCAAGCTCATCCC 1815425 Query 350431 TAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCA 350490 | || | || || || || || |||||| | || || || || | || || || || Sbjct 1815426 CCGCAACACGACCGTCCCCACCAAGAAGTCCGAGACCTTCTCGACCTACGCCGACAACCA 1815485 Query 350491 GCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAA 350550 ||| | || || || || | || ||||| ||||| ||||| || ||||| || Sbjct 1815486 GCCCGGTGTCTTGATCCAGGTCTACGAGGGTGAGCGTGCCCGCACAAAGGATAACAACCT 1815545 Query 350551 ACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGA 350610 || || | || || || || || || || | || ||||| ||| | || Sbjct 1815546 CCTCGGCAAGTTCGAGCTCTCTGGCATCCCCCCCGCCCCCCGTGGTGTTCCGCAGGTCGA 1815605 Query 350611 AGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGC 350655 |||| | ||||| |||||| | || |||||| | || || |||| Sbjct 1815606 AGTCACCTTCGACATTGATGCCAACGGTATTCTCAACGTCTCCGC 1815650 >seq47 Length=1359276 Score = 104 bits (114), Expect = 7e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || | || || || ||||| || || ||||| | Sbjct 567939 TTTGCATACCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGT 567880 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || ||||||||||| | || || || | Sbjct 567879 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGT 567820 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | ||| || || ||||||| || || | Sbjct 567819 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCAATCGTGTCCGAGG 567760 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 567759 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 567705 Score = 100 bits (110), Expect = 9e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || | || || || ||||| || || ||||| | Sbjct 821718 TTTGCATACCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGT 821659 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || ||||||||||| | || || || | Sbjct 821658 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGT 821599 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | ||| || || ||||||| || || | Sbjct 821598 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCAATCGTGTCCGAGG 821539 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || || ||||| Sbjct 821538 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 821484 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || || || | | || || ||||| || | Sbjct 822146 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGA 822088 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | || || || || || ||||| || || || ||||| | Sbjct 822087 GCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTGGA 822028 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | ||| || || ||||||| || || | || || || || || | ||||| | Sbjct 822027 TCTTGGTTTTGACGTTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGC 821968 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || || || ||||| Sbjct 821967 CGGTCAGGGTCTTGACGAAGATTTGCAT 821940 >seq24 Length=1725410 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| |||||||| || ||||| | Sbjct 1413370 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAATCGGC 1413429 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || || ||||| ||||||||||| || || || Sbjct 1413430 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGG 1413489 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || | || || || || |||| || || | || || Sbjct 1413490 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 1413549 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || ||||| || |||| Sbjct 1413550 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 1413596 >seq10 Length=1963216 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 || ||||| || | | || || | ||| || || ||||| ||||| || || || || Sbjct 1805559 ATGCCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCG 1805618 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | || || || ||||| || || || || || || ||||| ||||||||||| || || Sbjct 1805619 GCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGC 1805678 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || ||||| || || || || || | || || || || |||| || || | || Sbjct 1805679 GGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 1805738 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || || | ||||| || || || || || ||||| || ||| Sbjct 1805739 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 1805786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253215733983