Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015455.1_202016-12- 23] 61 sequences; 27,876,544 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq28 322 5e-83 seq24 138 1e-27 >seq28 Length=749551 Score = 322 bits (356), Expect = 5e-83 Identities = 532/765 (70%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || || ||||| ||||| | ||| ||| || ||||| Sbjct 3433 TCATGCGTGTCGCCGTCGGCATTCACGGGCACGACATCGAGCGCGTCTTGCAGTCGTACA 3492 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | ||||||||| |||||| |||| || || |||||||| || ||| Sbjct 3493 ACCTCATGTCCGAGCGGTACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 3552 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| || ||| |||| ||||||||||||| |||||||| |||| Sbjct 3553 CTCACCCGCAGCTTTCGTCGTGTTTCTTGGTCACGATGAAGGATGATTCGATCGAAGGCA 3612 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 3613 TCTACGACACGCTCAAGACGTGCGCTCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 3672 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | || || ||||||||| | | | | Sbjct 3673 GCATCCACAACATCCGCGCGACCGGCTCCTACATTGCCGGCACGAACGGCTACTCGAACG 3732 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| ||| ||||| || || |||||| |||| ||||| Sbjct 3733 GCATCGTCCCCATGCTCCGTGTCTACAATAACACCGCGCGCTACGTCGACCAAGGTGGCA 3792 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||| ||| | | |||| Sbjct 3793 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTCTTCGAGT 3852 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || ||| | Sbjct 3853 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTTTTGG 3912 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || ||||||||| | || ||| | || || ||| ||| Sbjct 3913 CGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGCGACTGGCCCCTCT 3972 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| |||||| ||||| | ||||| || || ||||| || | ||| Sbjct 3973 TCTGCCCCGCCGAAGCCCCCGGTCTCCACGAAGTCTATGGCGAAGAGTTCAAGGCCTTGT 4032 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||| ||| |||||||| | || |||| || | ||| Sbjct 4033 -TCGAGAAATACGAAAAGGAGGGTCGCGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGG 4091 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | ||||| ||| || |||||| || || || | || | |||| ||||||||| | Sbjct 4092 TACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCTCTACAAGGACGCC 4151 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| |||| ||||| |||||| | ||| ||||| ||| Sbjct 4152 GCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCG 4196 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || || || Sbjct 5148 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTC 5207 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || ||||| ||||| | ||| |||||||| || || || |||||| | || || || Sbjct 5208 GGCCGATCGAGGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 5267 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 5268 GACGATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGG 5327 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 ||||||||| |||| || |||||| Sbjct 5328 TATGTACTACTTGCGCACGCGCGCC 5352 >seq24 Length=1725410 Score = 138 bits (152), Expect = 1e-27 Identities = 288/422 (68%), Gaps = 9/422 (2%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 582674 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACC 582615 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | |||||| ||||| | | ||||| | ||| | ||||| | Sbjct 582614 AAGACGGCTCGATGCTTTGACCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 582555 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| |||||||||||| || ||| | Sbjct 582554 GATGGAAGACGCTACGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAACG--AGCCGAA 582499 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 582498 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 582439 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | ||| ||||| |||| |||| | Sbjct 582438 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATAATGGTGCCTTGCAAACTCATT 582379 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| || | ||| || |||| || | ||||| || Sbjct 582378 TCACCGTGATGGTACGCCGAGTGCTCAGCAACGTAACCGCCCAATTGTCCGACCTTGATC 582319 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| || ||||| || || | | |||||||| || ||| || ||| Sbjct 582318 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCTGGCTT-AAA 582260 Query 152290 CC 152291 || Sbjct 582259 CC 582258 Score = 114 bits (126), Expect = 1e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 582519 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 582460 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || | Sbjct 582459 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATA 582400 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 582399 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCAGCAACGTAACCG 582340 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 582339 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 582280 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| |||||| | ||||| Sbjct 582279 TTGCGTTGACCTGGCTTAAACCCATC 582254 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 580505 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 580446 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 580445 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 580396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215582747800