Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq88 141 1e-28 >seq88 Length=4649774 Score = 141 bits (156), Expect = 1e-28 Identities = 423/646 (65%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 |||||| ||| | ||| || || | |||||||||||| |||||||| || || | || Sbjct 2234893 CCACTCGCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCAGAGCGCAAAGAA 2234834 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| | | | |||||| || || ||||| ||| || |||||| | | Sbjct 2234833 GAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAA 2234774 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | |||| ||||||||||| | ||| || | | ||||||| || ||||| || || Sbjct 2234773 GACGTCAGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCCAGGACGCTTGTTGCCACC 2234714 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | ||| | |||||||| || || || | | ||| || | || || || || Sbjct 2234713 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 2234654 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || || || |||| ||| ||| || | || || || ||| ||| | ||| Sbjct 2234653 GTAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTTATGAATGCTCAAACC 2234594 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCT 54368 || || || || | || || || | || || ||| || | ||| || |||||||| | Sbjct 2234593 GATACCGCCGGCGGTCTTGGAAATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCTT 2234535 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | || ||| ||| |||| | | || |||||| || | || | || |||| Sbjct 2234534 CAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTC 2234475 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | || || || | || || || ||||| ||||| | || || | || ||||||| Sbjct 2234474 CGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACG 2234415 Query 54489 TCTCGATAGCTGAG-TCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAAC 54544 || | || | | || || || ||| || || || || ||||| ||||| | | Sbjct 2234414 ACT-GCAAGACGCGCTCGATGTC---GTGACCGTGGATGCCGACGGCGACGCGCATGAGC 2234359 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 |||||||| |||| ||| ||| |||| || || ||||||||||| || | Sbjct 2234358 ATGTGCTGCGGTCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGC 2234299 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 ||||| || ||||| |||||||| ||| || || ||||| |||| Sbjct 2234298 GTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCGTAGATAA 2234253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720442242880