Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq61 141 1e-28 seq88 122 1e-22 seq73 114 1e-20 >seq61 Length=3738257 Score = 141 bits (156), Expect = 1e-28 Identities = 176/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| ||||| |||| | ||| | |||||| |||| || |||||| || || ||||| Sbjct 597910 CTACTGTCCCCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTA 597851 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||| || || || || |||| || |||||||| || ||||| || | |||||||||||| Sbjct 597850 ATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 597791 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTC 43127 || || | || |||||||||| ||| | || | |||| ||| | | | |||||| Sbjct 597790 GGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAG 597733 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || |||| ||| || || ||||| || || ||||| || ||||||||||| Sbjct 597732 GATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597677 Score = 138 bits (152), Expect = 1e-27 Identities = 161/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| || |||||| || || |||||||| || || || || |||| || Sbjct 872052 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 871993 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || | |||||||||||||| || | | |||||||| | | Sbjct 871992 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGGATACCCTCCTTGT-CTT 871934 Query 43094 GATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || | || || |||| ||| | | | |||||| ||| || || |||| |||||| || Sbjct 871933 GAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTC 871875 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| |||||||| |||||||| ||||| Sbjct 871874 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 871843 Score = 134 bits (148), Expect = 2e-26 Identities = 160/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| || |||||| || || |||||||| || || || || |||| || Sbjct 597202 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597143 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || | |||||||||||||| || | || |||||||||| | Sbjct 597142 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 597084 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || |||| | |||| ||| | | | ||| || ||||| || |||| ||| || || Sbjct 597083 GAATTTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTC 597025 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| |||||||||||||| Sbjct 597024 TTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 596993 Score = 129 bits (142), Expect = 7e-25 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| || |||||| || || |||||||| || || || || |||| || Sbjct 597430 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597371 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || | |||||||||||||| || | || |||||||||| | Sbjct 597370 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 597312 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || | || | |||| ||| | | | |||||| ||||| || |||| ||| || || Sbjct 597311 GAATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTC 597253 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| || ||||||||||| Sbjct 597252 TTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597221 Score = 125 bits (138), Expect = 8e-24 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| || |||||| || || |||||||| || || || || |||| || Sbjct 596974 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 596915 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || | |||||||||||||| || | || |||||||||| | Sbjct 596914 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 596856 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || | || | |||| ||| | | | ||| || ||||| || |||| ||||| || Sbjct 596855 GAATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTC 596797 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| ||||| |||||||| Sbjct 596796 TTGCCGGTCAGGGTCTTGACAAAAATTTGCAT 596765 Score = 125 bits (138), Expect = 8e-24 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| || |||||| || || |||||||| || || || || |||| || Sbjct 597658 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597599 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || | |||||||||||||| || | || |||||||||| | Sbjct 597598 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 597540 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || | || | |||| ||| | | | ||| || ||||| || |||| ||||| || Sbjct 597539 GAATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTC 597481 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | ||||| |||||||||||||| Sbjct 597480 TTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 597449 Score = 123 bits (136), Expect = 3e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 42948 TCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 43007 ||||| || || || | | ||| | |||||| || | || |||||| || |||||| Sbjct 872306 TCCTACTGACCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTG 872247 Query 43008 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 43067 || || || || || || |||| || |||||||| || || || || | |||||||||| Sbjct 872246 TAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGG 872187 Query 43068 TCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCT 43126 |||| || | || |||||| ||| ||| || |||| ||| | | | ||| || Sbjct 872186 TCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTATCCGA 872128 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || |||| ||| || || ||||| || || ||||| |||||||||||||| Sbjct 872127 GGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 872071 >seq88 Length=4649774 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || |||| || || | || || |||||||| || || || Sbjct 184800 CTCCTTTTGAATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 184741 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || |||||||| | ||| | || |||||||| ||| || ||||| ||| Sbjct 184740 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTTTTGA-CGT 184682 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| ||||| || |||||||| || ||||| | Sbjct 184681 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGA 184622 Query 43171 CAAAGATTTGC 43181 | ||||||||| Sbjct 184621 CGAAGATTTGC 184611 >seq73 Length=1807266 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || ||||||||| || ||||| || |||| || || | || || Sbjct 313142 CACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTC 313083 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || ||||| || |||||||| | || | | ||||||||| Sbjct 313082 GAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTG 313023 Query 43094 GATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || |||| ||| | | | ||| ||| ||| || || |||| |||||||| | Sbjct 313022 GATCTTGGCCTTGA-CGTTGTCGATCGTATCGGACGACTCGACCTCGAGGGTGATGGTCT 312964 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 ||||||| || ||||| ||||||||||||| Sbjct 312963 TGCCCGTGAGGGTCTTGACAAAGATTTGCA 312934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816484955680