Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12-
23] 156 sequences; 39,900,209 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq88 150 2e-31
>seq88
Length=4649774
Score = 150 bits (166), Expect = 2e-31
Identities = 425/646 (66%), Gaps = 10/646 (2%)
Strand=Plus/Minus
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
|||||| ||| | ||| || || | |||||||||||| |||||||| || || | ||
Sbjct 2234893 CCACTCGCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCAGAGCGCAAAGAA 2234834
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | | |||||| || || ||||| ||| || |||||| | |
Sbjct 2234833 GAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAA 2234774
Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
| |||| ||||||||||| | ||| || || | ||||||| || ||||| || ||
Sbjct 2234773 GACGTCAGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCCAGGACGCTTGTTGCCACC 2234714
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
|| || | ||| | |||||||| || || || | | ||| || | || ||||| ||
Sbjct 2234713 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 2234654
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547
|| || ||||||| ||| ||| || | || || || ||| ||| | |||
Sbjct 2234653 GTAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTTATGAATGCTCAAACC 2234594
Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTT 63606
|| || || || | || || || | || || ||| || | |||||| ||||||||||
Sbjct 2234593 GATACCGCCGGCGGTCTTGGAAATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCTT 2234535
Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666
| || ||| || |||| | | || |||||| || | || | ||| ||||
Sbjct 2234534 CAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTC 2234475
Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726
| || || || | || || || ||||| ||||| | || || | || |||||||
Sbjct 2234474 CGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACG 2234415
Query 63727 TCT-CAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAAC 63782
|| ||| | | || || || ||| || || || || ||||| ||||| | |
Sbjct 2234414 ACTGCAAGA-CGCGCTCGATGTC---GTGACCGTGGATGCCGACGGCGACGCGCATGAGC 2234359
Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842
|||||||| |||| ||| | | ||| || || | ||||||||| || |
Sbjct 2234358 ATGTGCTGCGGTCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGC 2234299
Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63888
||||| || ||||| |||||||| ||| || || ||||| ||||
Sbjct 2234298 GTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCGTAGATAA 2234253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816371855680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |