Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq88 150 2e-31 >seq88 Length=4649774 Score = 150 bits (166), Expect = 2e-31 Identities = 425/646 (66%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 |||||| ||| | ||| || || | |||||||||||| |||||||| || || | || Sbjct 2234893 CCACTCGCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCAGAGCGCAAAGAA 2234834 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | | |||||| || || ||||| ||| || |||||| | | Sbjct 2234833 GAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAA 2234774 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | |||| ||||||||||| | ||| || || | ||||||| || ||||| || || Sbjct 2234773 GACGTCAGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCCAGGACGCTTGTTGCCACC 2234714 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | ||| | |||||||| || || || | | ||| || | || ||||| || Sbjct 2234713 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 2234654 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 || || ||||||| ||| ||| || | || || || ||| ||| | ||| Sbjct 2234653 GTAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTTATGAATGCTCAAACC 2234594 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTT 63606 || || || || | || || || | || || ||| || | |||||| |||||||||| Sbjct 2234593 GATACCGCCGGCGGTCTTGGAAATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCTT 2234535 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | || ||| || |||| | | || |||||| || | || | ||| |||| Sbjct 2234534 CAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTC 2234475 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | || || || | || || || ||||| ||||| | || || | || ||||||| Sbjct 2234474 CGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACG 2234415 Query 63727 TCT-CAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAAC 63782 || ||| | | || || || ||| || || || || ||||| ||||| | | Sbjct 2234414 ACTGCAAGA-CGCGCTCGATGTC---GTGACCGTGGATGCCGACGGCGACGCGCATGAGC 2234359 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 |||||||| |||| ||| | | ||| || || | ||||||||| || | Sbjct 2234358 ATGTGCTGCGGTCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGC 2234299 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63888 ||||| || ||||| |||||||| ||| || || ||||| |||| Sbjct 2234298 GTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCGTAGATAA 2234253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816371855680