Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq61 93.3 4e-14 seq88 87.8 2e-12 >seq61 Length=3738257 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||| | || || || | || || || || || |||||||||||| Sbjct 597906 TGTCCCCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 597847 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| ||| || || || || || || |||||| || ||||| ||||| Sbjct 597846 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 597787 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || ||||| ||| || || | | || | |||||| | || ||| Sbjct 597786 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCTGAGGATTCG 597727 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || | |||||||||||||| || || ||||| ||||||||| Sbjct 597726 ACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATA 597676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 597189 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 597130 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| |||||| || Sbjct 597129 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTG 597070 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | |||||||||||||| || Sbjct 597069 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTC 597010 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 597009 TTGACAAAGATTTGCATA 596992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 597417 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 597358 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 597357 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 597298 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || ||| || || | || | |||||||||||||| || Sbjct 597297 ACGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTC 597238 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 597237 TTGACGAAGATTTGCATA 597220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 597645 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 597586 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 597585 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 597526 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | ||||||||||||||| || Sbjct 597525 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 597466 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 597465 TTGACAAAGATTTGCATA 597448 >seq88 Length=4649774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| | || | || || || | || || || ||||| |||||||| ||| Sbjct 184836 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 184777 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || ||||| || || || ||| |||| ||||||||||| || || || Sbjct 184776 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 184717 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || ||| | | || | |||||| | | || || Sbjct 184716 GATGCCTTCCTTGTCTTGGATCTTGGTTTTGACGTTGTCGATCGTGTCGGACGACTCGAC 184657 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGC 143182 || | || | ||||||||| || | ||| || ||||| |||||| Sbjct 184656 CTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGACGAAGATTTGC 184611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013411321920