Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq88 107 3e-18 seq84 107 3e-18 >seq88 Length=4649774 Score = 107 bits (118), Expect = 3e-18 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 98036 AATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAG 98095 |||||||||||| ||||||||||| || ||||| | ||||| || | |||||| | Sbjct 2236085 AATCTACAAGACCGTCTGGGAGATCTCGCAAAAGACCATTATCGACTTGTCCGCCGACCG 2236144 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAG 98155 ||||| || |||||||||| |||||| | || | || ||| |||||||| | | | Sbjct 2236145 AGGTGCCTTCATTGACCAGTCGCAATCGCTAAACATTCAC-TTGTCGAGCCCAACGA-TG 2236202 Query 98156 TCGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTAC 98213 || | | || ||||| ||||| |||| ||||| || || ||||||||||||||| Sbjct 2236203 GCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGGCATGTAC 2236262 Query 98214 TA 98215 || Sbjct 2236263 TA 2236264 Score = 95.1 bits (104), Expect = 2e-14 Identities = 356/556 (64%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | || || |||||| | | ||||| | | || Sbjct 2234642 ACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGC 2234701 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| || || || || || | || ||||| | ||||| ||| Sbjct 2234702 TACGTCGACCAAGGTGGCAACAAGCGTCCTGGAGCCTTCGCGATCTACCTCGAACCGTGG 2234761 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || || || | || | ||||| ||| ||| || || | || Sbjct 2234762 CACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGC 2234821 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | || | ||| |||||| | || ||| | || ||| |||| ||| | | | Sbjct 2234822 GCTCGTGATCTCTTCTTTGCGCTCTGGATTCCGGATCTCTTTATGGAGCGTGTCGAGGCC 2234881 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | ||| | ||| ||| | ||||||| | | ||||| || ||| || ||| Sbjct 2234882 GCCGGCGAGTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGC 2234941 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGT 97165 |||||||| ||| || | | ||||| | |||||||| | | |||||| | Sbjct 2234942 GAAGAGTTCCGCGCCCTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGA-T 2235000 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 | || | | | || ||| | || || | || ||||| || || || | |||| Sbjct 2235001 CCCCGCGCAAAAGCTTTGGTACGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCGTT 2235060 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 ||| ||||||||||| ||| || || |||||| || | ||||| ||||| Sbjct 2235061 CATGCTCTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAA 2235120 Query 97286 GGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 | ||| || |||||||| || || | |||||| | | || || ||| || || || Sbjct 2235121 GTCCTCGAACCTGTGCACCGAGATCATTGAGTACTCGGCGCCCGATGAGTGCGCCGTCTG 2235180 Query 97346 CGTTCTGGCATCGGTC 97361 | | |||| ||| || Sbjct 2235181 CAATTTGGCCTCGATC 2235196 >seq84 Length=1022938 Score = 107 bits (118), Expect = 3e-18 Identities = 174/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| | |||||| ||||| |||| ||||| ||||| | ||||||| | || || Sbjct 125184 ATCTGGGCACAGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCCGAAGAGATGGACTTG 125243 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||| || |||| ||||| || | | | || ||||| | || || || Sbjct 125244 TCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGAC-GAGCGCTACTTCATCTC 125302 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||| | | ||||| || |||| |||||| || || |||||||| || || | || Sbjct 125303 GCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGGATTGTCAACGAGAACTTGGTCGAGCG 125362 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||||| ||| | ||| || | |||| ||| |||||||| || ||||||||||| Sbjct 125363 ATTCTCTGGTGAG--GTCCAGTCCGCCGAGG-CTCGATGCTTTTATGGTTTCCAAATCAT 125419 Query 125255 GAT 125257 ||| Sbjct 125420 GAT 125422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057754934560