Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq88 141 1e-28 >seq88 Length=4649774 Score = 141 bits (156), Expect = 1e-28 Identities = 425/647 (66%), Gaps = 12/647 (2%) Strand=Plus/Minus Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 |||||| ||| | ||| || || | |||||||||||| |||||||| || || | || Sbjct 2234893 CCACTCGCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCAGAGCGCAAAGAA 2234834 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | |||||| || || ||||| ||| || |||||| | | Sbjct 2234833 GAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAA 2234774 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | |||| ||||||||||| | ||| || || | ||||||| || ||||| || || Sbjct 2234773 GACGTCAGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCCAGGACGCTTGTTGCCACC 2234714 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 || || | ||| | |||||||| || || || | | ||| || | || || || || Sbjct 2234713 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 2234654 Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| || || || || | ||| ||| || | || || || ||| ||| | || Sbjct 2234653 -GTAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTTATGAATGCTCAAAC 2234595 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCC 63409 | || || || || | || || || | || || ||| || | ||| || |||||||| Sbjct 2234594 CGATACCGCCGGCGGTCTTGGAAATGAGCGCACA-CGTCTTGAGCGTGTCGTAGATGCCT 2234536 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || ||| ||| |||| | | || |||||| || | || | || ||| Sbjct 2234535 TCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTT 2234476 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || || || || | || || || ||||| ||||| | || || | || |||||| Sbjct 2234475 CCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTAC 2234416 Query 63530 GTCT-CAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAA 63585 | || ||| | | || || || ||| || || || || ||||| ||||| | Sbjct 2234415 GACTGCAAGA-CGCGCTCGATGTC---GTGACCGTGGATGCCGACGGCGACGCGCATGAG 2234360 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| |||| ||| ||| |||| || || | ||||||||| || | Sbjct 2234359 CATGTGCTGCGGTCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAG 2234300 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63692 ||||| || ||||| |||||||| ||| || || ||||| |||| Sbjct 2234299 CGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCGTAGATAA 2234253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630764417600