Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq73 113 4e-20 seq88 104 2e-17 >seq73 Length=1807266 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||| ||||||| ||||| ||||| | || || || ||||||| |||| || |||||| Sbjct 312930 ACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCG 312989 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||||| | ||| || ||| ||||| ||||| || || || ||| Sbjct 312990 TCCGATACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGAC 313049 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| || | || |||| ||||| ||| ||| ||| Sbjct 313050 CAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTAC 313109 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || ||||| Sbjct 313110 AACATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 313144 >seq88 Length=4649774 Score = 104 bits (114), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| | |||||| || || ||||| | || || || | ||||| |||| || |||| Sbjct 184604 GAACCAGGCAAATCTTCGTCAAGACACTTACGGGCAAGACGATCACCCTCGAGGTCGAGT 184663 Query 25054 CGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 |||| ||||| ||||| |||| || ||| | || ||||| ||||| || || Sbjct 184664 CGTCCGACACGATCGACAACGTCAA--AACCAAGA--TCCAAGACAAGGAAGGCATCCCG 184719 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || ||||| || || | || ||||||||||| || | || |||| ||||| ||| | Sbjct 184720 CCAGACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCC 184779 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| || || || || || || || || Sbjct 184780 GACTACAACATTCAAAAGGAGTCGACCCTCCACTTGGTCCT 184820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327176135140