Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12-
23] 156 sequences; 39,900,209 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq71 123 5e-23
seq73 93.3 9e-14
seq85 87.8 4e-12
>seq71
Length=931223
Score = 123 bits (136), Expect = 5e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| || |||| ||||| ||||| ||||| || ||||| ||||| || |||| ||||||
Sbjct 332307 GGTATCGTTGGCCCCAACGGTGCCGGTAAATCGACCCTGATCAAGCTCTTGACGGGCGAG 332248
Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
||| | || || || ||| |||||| || ||| |||| | || ||||| |||
Sbjct 332247 ACCGTGCCCGACGAAGGCAAGGTTGAGAAGCACCCTAACTTGCGTGTCGCGTACGTGGCT 332188
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349
|| ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| |||
Sbjct 332187 CAACACGCGTTCCACCACATCGAGGAACACCTTGAGAAGACGGCGATGCAGTACATCCAG 332128
Query 280350 TGGCGCTA 280357
||||| ||
Sbjct 332127 TGGCGTTA 332120
>seq73
Length=1807266
Score = 93.3 bits (102), Expect = 9e-14
Identities = 234/356 (66%), Gaps = 0/356 (0%)
Strand=Plus/Minus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|| || ||| |||||||| | || || |||||| | || | |||||||||||||
Sbjct 1174802 GATTTTATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGTTCTATTCCC 1174743
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
|| | ||||| |||| || || || ||| || | || | ||||||||
Sbjct 1174742 TCTGTCATTGATGGGTTCAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 1174683
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
|| ||| ||||| || ||||||| || || ||||| || |||| || |
Sbjct 1174682 AAGCTGACGCAAGAGATCAAGGTCGGACAATTGGGCGGTTACGTCGCCGAGCACTCGGCG 1174623
Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757
|||||||||||||| |||| |||| || |||| | ||| |||| || | | ||
Sbjct 1174622 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGCCTGGCGCAACAGTTCGTC 1174563
Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817
|| |||||| | ||| | || ||| |||||||| ||||| ||||||| |||
Sbjct 1174562 GGGTCCAACAACCTCAACGTTCTCGACCCGAACGGTCAATTTGGCACTCGTCTGCAAGGT 1174503
Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873
|| || || ||||| || | || ||||| || || | || || | |||||
Sbjct 1174502 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAACGTATCATCCATCACGCG 1174447
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| ||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 1006898 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 1006839
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 1006838 CCCGCATCGGGC 1006827
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| ||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 1023155 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 1023214
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 1023215 CCCGCATCGGGC 1023226
>seq85
Length=1960381
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || ||||| ||||| |||||||||||||| || | | || ||||| || |
Sbjct 1116187 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 1116246
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| | || |||| || ||||| || |||||| ||||| ||||| ||||||
Sbjct 1116247 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 1116306
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | | ||||| || |||| || | ||| |||| ||||| ||||||||
Sbjct 1116307 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1116366
Query 279879 GGCTTCCT 279886
||||||||
Sbjct 1116367 GGCTTCCT 1116374
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || ||||| ||||| |||||||||||||| || | | || ||||| || |
Sbjct 1122640 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 1122581
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| | || |||| || ||||| || |||||| ||||| ||||| ||||||
Sbjct 1122580 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 1122521
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | | ||||| || |||| || | ||| |||| ||||| ||||||||
Sbjct 1122520 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1122461
Query 279879 GGCTTCCT 279886
||||||||
Sbjct 1122460 GGCTTCCT 1122453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834745611196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |