Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq71 123 5e-23 seq73 93.3 9e-14 seq85 87.8 4e-12 >seq71 Length=931223 Score = 123 bits (136), Expect = 5e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || |||| ||||| ||||| ||||| || ||||| ||||| || |||| |||||| Sbjct 332307 GGTATCGTTGGCCCCAACGGTGCCGGTAAATCGACCCTGATCAAGCTCTTGACGGGCGAG 332248 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || ||| |||||| || ||| |||| | || ||||| ||| Sbjct 332247 ACCGTGCCCGACGAAGGCAAGGTTGAGAAGCACCCTAACTTGCGTGTCGCGTACGTGGCT 332188 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| ||| Sbjct 332187 CAACACGCGTTCCACCACATCGAGGAACACCTTGAGAAGACGGCGATGCAGTACATCCAG 332128 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 332127 TGGCGTTA 332120 >seq73 Length=1807266 Score = 93.3 bits (102), Expect = 9e-14 Identities = 234/356 (66%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || || ||| |||||||| | || || |||||| | || | ||||||||||||| Sbjct 1174802 GATTTTATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGTTCTATTCCC 1174743 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| |||| || || || ||| || | || | |||||||| Sbjct 1174742 TCTGTCATTGATGGGTTCAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 1174683 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || ||| ||||| || ||||||| || || ||||| || |||| || | Sbjct 1174682 AAGCTGACGCAAGAGATCAAGGTCGGACAATTGGGCGGTTACGTCGCCGAGCACTCGGCG 1174623 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||| |||| |||| || |||| | ||| |||| || | | || Sbjct 1174622 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGCCTGGCGCAACAGTTCGTC 1174563 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || ||| |||||||| ||||| ||||||| ||| Sbjct 1174562 GGGTCCAACAACCTCAACGTTCTCGACCCGAACGGTCAATTTGGCACTCGTCTGCAAGGT 1174503 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 || || || ||||| || | || ||||| || || | || || | ||||| Sbjct 1174502 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAACGTATCATCCATCACGCG 1174447 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 1006898 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 1006839 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1006838 CCCGCATCGGGC 1006827 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 1023155 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 1023214 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1023215 CCCGCATCGGGC 1023226 >seq85 Length=1960381 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 1116187 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 1116246 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 1116247 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 1116306 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 1116307 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1116366 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 1116367 GGCTTCCT 1116374 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 1122640 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 1122581 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 1122580 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 1122521 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 1122520 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1122461 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 1122460 GGCTTCCT 1122453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834745611196