Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq61 100 2e-16 seq88 93.3 4e-14 >seq61 Length=3738257 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||| || || || || |||||||||||| Sbjct 596994 ATACCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 596935 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || || ||| |||| | ||||| ||||| || Sbjct 596934 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 596875 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | || || | ||||||| Sbjct 596874 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTATCCGAGGATTCG 596815 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| ||||||||||| || || |||||||| ||||| Sbjct 596814 ACCTCGAGTGTGATCGTCTTGCCGGTCAGGGTCTTGACAAAAATTTGCAT 596765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||| || || || || |||||||||||| Sbjct 597450 ATACCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 597391 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || || ||| |||| | ||||| ||||| || Sbjct 597390 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 597331 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | ||||| | ||||||| Sbjct 597330 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCTGAGGATTCG 597271 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| ||||||||||| || || || || || ||||| Sbjct 597270 ACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597221 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || | ||| || || || || |||||||||||| | || || || ||| Sbjct 597885 ACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCA 597826 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||| | ||||| ||||| || |||||||| || ||||| | Sbjct 597825 AGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 597766 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | ||||| | ||||||||| || | || | ||| ||| Sbjct 597765 ATCTTGGCCTTGACGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCTTG 597706 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| || || || || || ||||| Sbjct 597705 CCGGTCAGGGTCTTGACGAAGATTTGCAT 597677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||| || || || || |||||||||||| Sbjct 597222 ATACCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 597163 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || || ||| |||| | ||||| ||||| || Sbjct 597162 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 597103 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||| || || | | || | || || | ||||||| Sbjct 597102 GGAATGCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTGTCGATCGTATCCGAGGATTCG 597043 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| ||||||||||| || || ||||| || ||||| Sbjct 597042 ACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 596993 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||| || || || || |||||||||||| Sbjct 597678 ATACCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 597619 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || || ||| |||| | ||||| ||||| || Sbjct 597618 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 597559 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | || || | ||||||| Sbjct 597558 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTATCCGAGGATTCG 597499 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| |||||||||| || || ||||| || ||||| Sbjct 597498 ACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 597449 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||| || || || || |||||||||||| Sbjct 872072 ATACCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 872013 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || || ||| |||| | ||||| ||||| || Sbjct 872012 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 871953 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | |||| ||||| | || ||| Sbjct 871952 GGGATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCG 871893 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| ||||| || || || || ||||| |||||||| Sbjct 871892 ACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 871843 >seq88 Length=4649774 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||| ||| || || || ||| || || || || || Sbjct 184805 GTCGACTCCTTTTGAATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCG 184746 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| || ||||| || || |||||||| ||||| ||||| ||| Sbjct 184745 GCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTTTTG 184686 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || ||||| || | ||| | ||| ||||| || || || Sbjct 184685 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGTGTC 184626 Query 114366 TTTACAAAAATCTGCATGG 114384 || || || || ||| ||| Sbjct 184625 TTGACGAAGATTTGCCTGG 184607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133601219472