Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq88 340 3e-88 seq84 120 6e-22 >seq88 Length=4649774 Score = 340 bits (376), Expect = 3e-88 Identities = 843/1265 (67%), Gaps = 32/1265 (3%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| ||||||| |||||||||||||||||| |||||| | | ||| |||| | Sbjct 2235468 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTGCGCGCCTCGGGC 2235409 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||| || || ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 2235408 GAATCGAACGGCATCGCCAATGCCATGAACGCGTCGGCGAGCCCTTGCACTCCGATGCCG 2235349 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || ||||||| | || ||| ||||| || ||||| ||||| Sbjct 2235348 ATGGGGCGGTGGCGGAAGTTGGAGTACTGCGCCTCGATGACGGGATAGTAGTTGACGTCG 2235289 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | |||||| ||| || | || |||||| Sbjct 2235288 ATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTCTTGAAGTCG 2235229 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 || || | | || || | | ||| ||| || | ||| |||| Sbjct 2235228 CACACGCCG---TTCT------TGATAAAGCTCGGCAACGCGAT-----CGA----GGCC 2235187 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | ||||||||||| ||| || | | ||||| | ||||||||||| ||||| Sbjct 2235186 AAATTGCAGACGGCGCACTCATCGGGCGCCGAGTACTCAATGATCTCGGTGCACAGGTTC 2235127 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 | ||||||| ||||| |||| || || || || || ||| ||||||||||||| Sbjct 2235126 GAGGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAG 2235067 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCT 244869 |||||||| || ||||| |||| |||||| |||| | ||| || ||| || | Sbjct 2235066 AGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGC-GTACCAAAGCTTTTG 2235008 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 || || |||| | || |||||| ||||| | ||||||| ||| Sbjct 2235007 CGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAA 2234948 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| ||| |||| |||| ||||||||| || ||||| | ||| |||||| Sbjct 2234947 CTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCACTC 2234888 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 |||| || ||| ||| | || ||| ||||| || || |||||||| || |||||| || Sbjct 2234887 GCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCAGAGCGCAAAGAAGAGATC 2234828 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| | || |||| || || |||||||| Sbjct 2234827 ACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTC 2234768 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 ||||||| || || | ||||| |||| ||| || || ||||||||||| || ||||| Sbjct 2234767 AGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCCAGGACGCTTGTTGCCACCTTGGTC 2234708 Query 245170 CACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 || | | || |||| ||| || || | || || |||||||| |||| ||| Sbjct 2234707 GACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTAGCC 2234648 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCC 245289 ||| || || |||||||| ||| | | | || ||| ||| || || | || Sbjct 2234647 GTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTTATGAATGCTCAAACCGATACC 2234588 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 ||||||| |||||| ||||| || || |||||| ||||| ||||| || || Sbjct 2234587 GCCGGCGGTCTTGGAAATGAGCGCACACGTCTTGAGCGTGTCGTAGATGCCTTCAATCGA 2234528 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 || |||||| ||| ||| || ||||| || ||||| || | || | | | ||| Sbjct 2234527 ATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTT 2234468 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGA 245468 ||| || || || ||||||||||||||||| |||| || | || ||||| ||| | Sbjct 2234467 GAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGC-GCTCGGACATGAGGTTGTACGACTGCA 2234409 Query 245469 GCAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG 245526 ||| ||| ||||||| || |||||||| | |||| | |||||| ||||||| Sbjct 2234408 --AGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACGCGCATGAGCATGTGCTG 2234351 Query 245527 -GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTT 245583 || ||| ||| | | || | ||| | |||| |||||||||||||||||| || Sbjct 2234350 CGGTCGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGCGTTTT 2234294 Query 245584 GAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTC 245643 ||| |||||||| ||||||||| ||| || || | ||||| || ||| | || Sbjct 2234293 GAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCGTAGATAACGGCGCTGTTGAGGCGGTC 2234234 Query 245644 GGCGT 245648 ||||| Sbjct 2234233 GGCGT 2234229 >seq84 Length=1022938 Score = 120 bits (132), Expect = 6e-22 Identities = 188/263 (71%), Gaps = 11/263 (4%) Strand=Plus/Plus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | || || |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 125909 GGCTCGTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 125968 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| ||||| ||||| Sbjct 125969 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTTTTGTTC 126028 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| |||| || ||| | |||||||| |||||| Sbjct 126029 TC---CCACCTCGAGC-GAAGACCTCACCCAGATACCGTCGCGCTCATCATCAAGGAGGC 126084 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC---CGTGTCCCTGGTCGGCAT 42979 ||| || ||||||||||| ||| | || || | || || || || || |||| || Sbjct 126085 CGTCGAAATCGAGAAGGAATTCTTGACCGAGGCTCTTCCTTGCG-GT--TTGATCGGTAT 126141 Query 42980 GAACCACGACCTCATGTGCAAGT 43002 ||| | | ||||||||| ||| Sbjct 126142 GAATGCCAAGCTCATGTGCCAGT 126164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337358538560