Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12-
23] 156 sequences; 39,900,209 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq88 154 1e-32
seq73 96.9 3e-15
seq84 87.8 2e-12
>seq88
Length=4649774
Score = 154 bits (170), Expect = 1e-32
Identities = 573/876 (65%), Gaps = 29/876 (3%)
Strand=Plus/Minus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTC 153655
|| || || |||| ||| |||||||| ||| |||| || || ||||| | ||||||
Sbjct 2235198 GCGATCGAGGCCAAATTGCAGACGGCGCACTCATCGGGCGCCGA-GTACTCAATGATCTC 2235140
Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATT-GCTTTTGCGATTGC 153714
|| ||| ||||| | | || || ||| | || | || || | ||| | ||||
Sbjct 2235139 GGTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGC 2235080
Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA--- 153771
||||| ||| |||||||| |||| |||||| ||||| || | ||||| ||
Sbjct 2235079 G-GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCGT 2235021
Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831
||| | || | ||||| | | | || | ||||||||| | |||||| ||
Sbjct 2235020 ACCAAAGC---TTTTGCGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCT 2234964
Query 153832 CGTACAGTCGCTCA-AACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGA 153890
|| |||| || | ||||| ||||| ||| ||| ||||||||| || ||||
Sbjct 2234963 CGAACAGG-GCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGG-CTTCGGCGGG 2234906
Query 153891 -CACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949
|| | || | |||| || |||| | ||| || ||| || |||||||| | |||
Sbjct 2234905 GCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCA 2234846
Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGA 154007
|||||| | | ||| || || || | |||||| ||| ||| || | ||
Sbjct 2234845 GAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTC--TTGCGAAGG 2234788
Query 154008 TTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTT 154066
| || | | | | ||| ||| |||||||| ||||| | ||||| || | ||| ||
Sbjct 2234787 TCCAGGAACTCGA-AGACGTCAGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCCAGG 2234729
Query 154067 ACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123
|||||| || || || ||||||| |||| | | |||||| |||| || | ||||||
Sbjct 2234728 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGG 2234669
Query 154124 TTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183
| | |||| | | | |||||| || ||| | | |||| ||||| | |
Sbjct 2234668 GACGATGCCGTTCGAGTAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTT 2234609
Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCC--AGC 154241
||| | | | | || || |||||| || ||| || ||| |||||| || | |||
Sbjct 2234608 ATGAATGCTCAAACCGATACCGCCGGCGGTCTTGGAAATG--AGCGCACACGTCTTGAGC 2234551
Query 154242 GTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATT 154301
|| ||||||||| || || |||||| | || || |||||| || | |
Sbjct 2234550 GTGTCGTAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGC 2234491
Query 154302 TGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTG 154360
||||| ||||||| || ||||| || || ||||| ||||| || | |
Sbjct 2234490 TGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCG 2234431
Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420
| ||| | | ||||| | | | || ||||| || | ||||| ||||||| ||
Sbjct 2234430 GA-CATGAGGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGC 2234372
Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456
|||||||||||||||||||||||| |||||||||||
Sbjct 2234371 GACGCGCATGAGCATGTGCTGCGGTCGTTCGGCGAC 2234336
Score = 116 bits (128), Expect = 4e-21
Identities = 167/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||| | || | || || || | | | ||||||||||||||||||||||||
Sbjct 184836 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 184777
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || |||||||| || || |||| | |||| ||||| || ||||| || ||
Sbjct 184776 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 184717
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| ||||| ||||| || | || ||||| | ||| || | ||||||| ||||||
Sbjct 184716 GATGCCTTCCTTGTC-TTGGATCTTGGTTTTGACGTTG-TCGATCGTGTCGGACGACTCG 184659
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616
||||||| || | ||| || || || || || || || || || ||| |||
Sbjct 184658 ACCTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGACGAAGATTTGCCTGG 184607
>seq73
Length=1807266
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| || | || || || | | | ||||||||||| |||||||||||| |
Sbjct 313159 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 313100
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||| || || |||| | |||| ||||| || ||||| || ||
Sbjct 313099 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 313040
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || || | | || | || |||| |||||| |||
Sbjct 313039 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCGGACGACTCGACC 312980
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613
|||| || | || || || || || || || ||||| || ||||
Sbjct 312979 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 312934
>seq84
Length=1022938
Score = 87.8 bits (96), Expect = 2e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC-AGCCAAAGTACTTCAA 52756
|||||||||||||| || || || ||||||| | || |||| | || ||| || ||
Sbjct 126240 TACATCGAGTTTGTCGCCGACCGCTTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 126298
Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816
||| || || || || |||||||||| || ||||| ||||||||||| ||||| ||
Sbjct 126299 CGCCGAGAACCCCTTCGATTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTCTT 126358
Query 52817 CGAGAAGCGAGT 52828
|||||||| ||
Sbjct 126359 TGAGAAGCGTGT 126370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261432288320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |