Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq88 154 1e-32 seq73 96.9 3e-15 seq84 87.8 2e-12 >seq88 Length=4649774 Score = 154 bits (170), Expect = 1e-32 Identities = 573/876 (65%), Gaps = 29/876 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTC 153655 || || || |||| ||| |||||||| ||| |||| || || ||||| | |||||| Sbjct 2235198 GCGATCGAGGCCAAATTGCAGACGGCGCACTCATCGGGCGCCGA-GTACTCAATGATCTC 2235140 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATT-GCTTTTGCGATTGC 153714 || ||| ||||| | | || || ||| | || | || || | ||| | |||| Sbjct 2235139 GGTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGC 2235080 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA--- 153771 ||||| ||| |||||||| |||| |||||| ||||| || | ||||| || Sbjct 2235079 G-GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCGT 2235021 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| | || | ||||| | | | || | ||||||||| | |||||| || Sbjct 2235020 ACCAAAGC---TTTTGCGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCT 2234964 Query 153832 CGTACAGTCGCTCA-AACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGA 153890 || |||| || | ||||| ||||| ||| ||| ||||||||| || |||| Sbjct 2234963 CGAACAGG-GCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGG-CTTCGGCGGG 2234906 Query 153891 -CACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 || | || | |||| || |||| | ||| || ||| || |||||||| | ||| Sbjct 2234905 GCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCA 2234846 Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGA 154007 |||||| | | ||| || || || | |||||| ||| ||| || | || Sbjct 2234845 GAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTC--TTGCGAAGG 2234788 Query 154008 TTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTT 154066 | || | | | | ||| ||| |||||||| ||||| | ||||| || | ||| || Sbjct 2234787 TCCAGGAACTCGA-AGACGTCAGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCCAGG 2234729 Query 154067 ACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 |||||| || || || ||||||| |||| | | |||||| |||| || | |||||| Sbjct 2234728 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGG 2234669 Query 154124 TTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183 | | |||| | | | |||||| || ||| | | |||| ||||| | | Sbjct 2234668 GACGATGCCGTTCGAGTAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTT 2234609 Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCC--AGC 154241 ||| | | | | || || |||||| || ||| || ||| |||||| || | ||| Sbjct 2234608 ATGAATGCTCAAACCGATACCGCCGGCGGTCTTGGAAATG--AGCGCACACGTCTTGAGC 2234551 Query 154242 GTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATT 154301 || ||||||||| || || |||||| | || || |||||| || | | Sbjct 2234550 GTGTCGTAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGC 2234491 Query 154302 TGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTG 154360 ||||| ||||||| || ||||| || || ||||| ||||| || | | Sbjct 2234490 TGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCG 2234431 Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420 | ||| | | ||||| | | | || ||||| || | ||||| ||||||| || Sbjct 2234430 GA-CATGAGGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGC 2234372 Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||||||||||||| ||||||||||| Sbjct 2234371 GACGCGCATGAGCATGTGCTGCGGTCGTTCGGCGAC 2234336 Score = 116 bits (128), Expect = 4e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | || | || || || | | | |||||||||||||||||||||||| Sbjct 184836 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 184777 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||||| || || |||| | |||| ||||| || ||||| || || Sbjct 184776 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 184717 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| || | || ||||| | ||| || | ||||||| |||||| Sbjct 184716 GATGCCTTCCTTGTC-TTGGATCTTGGTTTTGACGTTG-TCGATCGTGTCGGACGACTCG 184659 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||||| || | ||| || || || || || || || || || ||| ||| Sbjct 184658 ACCTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGACGAAGATTTGCCTGG 184607 >seq73 Length=1807266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || || || | | | ||||||||||| |||||||||||| | Sbjct 313159 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 313100 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| | |||| ||||| || ||||| || || Sbjct 313099 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 313040 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | || |||| |||||| ||| Sbjct 313039 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCGGACGACTCGACC 312980 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 |||| || | || || || || || || || ||||| || |||| Sbjct 312979 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 312934 >seq84 Length=1022938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC-AGCCAAAGTACTTCAA 52756 |||||||||||||| || || || ||||||| | || |||| | || ||| || || Sbjct 126240 TACATCGAGTTTGTCGCCGACCGCTTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 126298 Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816 ||| || || || || |||||||||| || ||||| ||||||||||| ||||| || Sbjct 126299 CGCCGAGAACCCCTTCGATTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTCTT 126358 Query 52817 CGAGAAGCGAGT 52828 |||||||| || Sbjct 126359 TGAGAAGCGTGT 126370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261432288320