Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq61 147 2e-30 seq84 100 3e-16 >seq61 Length=3738257 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 596991 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 596932 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||||||||||||| ||||| || Sbjct 596931 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 596872 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| ||||| ||| || |||| ||||| Sbjct 596871 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGT-CGATCGTATCCGAGGATTCGAC 596813 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || |||||||| ||||| Sbjct 596812 CTCGAGTGTGATCGTCTTGCCGGTCAGGGTCTTGACAAAAATTTGCAT 596765 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 597219 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 597160 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||||||||||||| ||||| || Sbjct 597159 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 597100 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||| ||||| ||||| ||| || |||| ||||| Sbjct 597099 ATGCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTGT-CGATCGTATCCGAGGATTCGAC 597041 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || ||||| || ||||| Sbjct 597040 CTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 596993 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || |||||||| ||| | Sbjct 872297 CCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 872238 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || || |||||||||||||||| ||||| || Sbjct 872237 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGGTCGGGGGGA 872178 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| ||||| ||| || |||| ||||| Sbjct 872177 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT-CGATCGTATCCGAGGATTCGAC 872119 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || ||||| || ||||| Sbjct 872118 CTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 872071 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 597447 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 597388 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||||||||||||| ||||| || Sbjct 597387 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 597328 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| ||||| ||| ||||| | ||||| Sbjct 597327 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGT-CGATCGTGTCTGAGGATTCGAC 597269 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 597268 CTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597221 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 597675 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 597616 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||||||||||||| ||||| || Sbjct 597615 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 597556 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| || |||| ||||| Sbjct 597555 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTATCCGAGGATTCGAC 597497 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| |||||||||| || || ||||| || ||||| Sbjct 597496 CTCGAGTGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 597449 Score = 138 bits (152), Expect = 1e-27 Identities = 174/235 (74%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | |||||| || | ||| ||||| || || || ||||| Sbjct 597909 TACTG-TCCCCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTA 597851 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| | | |||||| || || ||||| || || ||| |||||||||||||||| || Sbjct 597850 ATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 597791 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||| || ||||||||||||||| || || ||||| ||||| ||| ||||| | Sbjct 597790 GGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGT-CGATCGTGTCTGAGG 597732 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 597731 ATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597677 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 872069 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 872010 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||||||||||||| ||||| || Sbjct 872009 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGG 871950 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| || || ||||| |||| || | ||||||| |||||| Sbjct 871949 ATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCAATCGTGTCCGACGACTCGAC 871891 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| || || || || ||||| |||||||| Sbjct 871890 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 871843 >seq84 Length=1022938 Score = 100 bits (110), Expect = 3e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497 |||||||| ||||||||||||||| || | || | || | | ||| ||| | | | Sbjct 126240 TACATCGAGTTTGTCGCCGACCGCTTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 126298 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | ||||||| || ||||| |||||||||| || ||||||||||||||||| ||||| || Sbjct 126299 CGCCGAGAACCCCTTCGATTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTCTT 126358 Query 47558 CGAGAAGCGCGT 47569 |||||||| || Sbjct 126359 TGAGAAGCGTGT 126370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499872773440