Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq61 147 2e-30 seq73 127 2e-24 seq88 123 3e-23 >seq61 Length=3738257 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||||| || ||||| |||| |||||||||||||| || || Sbjct 872262 CTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAA 872203 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||||| || | || |||||| ||| |||||| ||||| ||| Sbjct 872202 GATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGA-CGT 872144 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||| || ||||| || || | ||| || || ||||| ||||| || || | Sbjct 872143 TGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGA 872084 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 872083 CAAAGATTTGCAT 872071 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | ||||| |||| || |||||| ||||| ||||| |||| Sbjct 597903 CCCCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 597844 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||| ||||| ||||| ||||||||||||| || Sbjct 597843 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 597784 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| ||||| ||||| ||| | | | |||||| ||||| || Sbjct 597783 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAGGATTCGAC 597725 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||| || || ||||| ||||| || || || ||||||||||| Sbjct 597724 CTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597677 Score = 143 bits (158), Expect = 3e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||| |||| || ||||| |||| || Sbjct 872052 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 871993 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| ||||| ||||||||||||| || | | ||||||||| Sbjct 871992 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTG 871933 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| |||||| ||| | | | |||||| ||| || || || | |||||| || | Sbjct 871932 AATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCT 871874 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| ||||| || |||||||| ||||| Sbjct 871873 TGCCCGTAAGCGTCTTGACAAAGATCTGCAT 871843 Score = 140 bits (154), Expect = 4e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||| |||| || ||||| |||| || Sbjct 597430 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597371 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| ||||| ||||||||||||| || | || |||||||||| Sbjct 597370 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 597311 Query 46504 GATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| ||||| ||| | | | |||||| ||||| || || | ||| || || | Sbjct 597310 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCT 597252 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || ||||||||||| Sbjct 597251 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597221 Score = 134 bits (148), Expect = 2e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||| |||| || ||||| |||| || Sbjct 596974 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 596915 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| ||||| ||||||||||||| || | || |||||||||| Sbjct 596914 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 596855 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| ||||| ||| | | | ||| || ||||| || || | ||||| || | Sbjct 596854 AATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCT 596796 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || ||||| |||||||| Sbjct 596795 TGCCGGTCAGGGTCTTGACAAAAATTTGCAT 596765 Score = 134 bits (148), Expect = 2e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||| |||| || ||||| |||| || Sbjct 597202 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597143 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| ||||| ||||||||||||| || | || |||||||||| Sbjct 597142 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 597083 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 || || ||||| ||| | | | ||| || ||||| || || | ||| || || | Sbjct 597082 AATTTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCT 597024 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || |||||||||||||| Sbjct 597023 TGCCGGTCAGGGTCTTGACAAAGATTTGCAT 596993 Score = 134 bits (148), Expect = 2e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||| |||| || ||||| |||| || Sbjct 597658 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597599 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| ||||| ||||||||||||| || | || |||||||||| Sbjct 597598 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 597539 Query 46504 GATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| ||||| ||| | | | ||| || ||||| || || | ||||| || | Sbjct 597538 AATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCT 597480 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| || || |||||||||||||| Sbjct 597479 TGCCGGTCAAGGTCTTGACAAAGATTTGCAT 597449 >seq73 Length=1807266 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| | ||||| | || ||||||||||||||||| || Sbjct 313124 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 313065 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | | ||||||||| |||||| ||||| ||| Sbjct 313064 GATGAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 313006 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||| ||| ||| || || || | |||||||| |||||||| || || || | Sbjct 313005 TGTCGATCGTATCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 312946 Query 46581 CAAAGATTTGCA 46592 |||||||||||| Sbjct 312945 CAAAGATTTGCA 312934 >seq88 Length=4649774 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||||| | ||||| | || ||||||||||||||||| || Sbjct 184800 CTCCTTTTGAATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 184741 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | ||| | || |||||||| |||||| | |||| ||| Sbjct 184740 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTTTTGA-CGT 184682 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | ||||| || |||||||| || || || | Sbjct 184681 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGA 184622 Query 46581 CAAAGATTTGCATTTTGCACAAACA 46605 | ||||||||| | | |||| ||| Sbjct 184621 CGAAGATTTGCCTGGTTCACACACA 184597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237297785120