Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq88 145 9e-30 seq102 116 4e-21 seq84 107 2e-18 seq73 93.3 5e-14 >seq88 Length=4649774 Score = 145 bits (160), Expect = 9e-30 Identities = 590/923 (64%), Gaps = 15/923 (2%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||||||||| || || |||||| | | |||||| | || || Sbjct 2235198 GCGATCGAGGCCAAATTGCAGACGGCGCACTCATCGGGCGCCGAGTACTCAATGATCTCG 2235139 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| ||| || ||| ||||| || | ||||||||||| || ||||| Sbjct 2235138 GTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCG 2235079 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || ||||||||||||||| | || | || || || ||| | | |||||| || | | Sbjct 2235078 GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCGTAC 2235019 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | || || || | | ||||| || |||||| ||||| || | | Sbjct 2235018 CAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 2234960 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 ||||| ||||| || || | ||| ||| || || || | | | || ||||| Sbjct 2234959 CAGGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 2234900 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 || | ||| | || | |||| || |||| ||| || || || |||||||| || | Sbjct 2234899 GAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATAAAGAGATCCGGAATCCAGAGCGC 2234840 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | |||||||| | | || | || || | || ||||| || | || ||||| Sbjct 2234839 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 2234780 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 ||| | || || |||||||| || || || |||| |||| | ||| ||||| Sbjct 2234779 CTCGAAGACGTCAGCGTGCCACGGTTCGAGGTAGATCGCGAAGGCTCC---AGGACGCTT 2234723 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | || |||||||| ||| ||| | || || ||||| || | || Sbjct 2234722 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGAT 2234663 Query 106996 ACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGG 107053 || | || | || || || || ||| || ||| | || | | | ||| Sbjct 2234662 GCCGTTCGAGTAGCCGTTCGTACCGGCGATGTAGGAG--CCGGTCGCGCGGATGTTATGA 2234605 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113 ||| || || ||||| || || ||| || || |||||||| | | || || | Sbjct 2234604 ATGCTCAAACCGATACCGCCGGCGGTCTTGGAAATGAGCGCACACGTCTTGAGCGTGTCG 2234545 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 ||||| || | || || || ||||| | | || ||||| || || | |||||| Sbjct 2234544 TAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 2234485 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 107233 || || || || |||||||| || || | ||||| | || | | |||||| Sbjct 2234484 TGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATG 2234425 Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293 || ||| | || |||||| || ||||| | ||||||||||||| ||| || ||| Sbjct 2234424 AGGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACGCGC 2234365 Query 107294 ATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTC 107353 || | ||||| || ||| ||| || |||| |||| || | | ||| | Sbjct 2234364 ATGAGCATGTGCTGCGGTCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGC 2234305 Query 107354 TCAAGGGTTTTGAGACCAAAGTA 107376 || || ||||||| |||||||| Sbjct 2234304 TCGAGCGTTTTGAAGCCAAAGTA 2234282 >seq102 Length=717467 Score = 116 bits (128), Expect = 4e-21 Identities = 266/395 (67%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| |||||||| |||| ||| ||| || ||||| ||| | || ||| Sbjct 83564 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 83623 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| ||||| || | ||| | || || Sbjct 83624 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGCGTTGCCAAGTTGTACGCCTTCTG 83683 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||| | ||||| Sbjct 83684 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAA 83743 Query 7079 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATC 7136 ||| || || ||| | || ||| ||| ||| ||||| | ||| || | ||| | | || Sbjct 83744 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAAATCTCGCGA-GCTGTC 83801 Query 7137 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 7196 | ||| | ||| || |||| | | | | | || ||| | | || || | Sbjct 83802 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGT 83861 Query 7197 GATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAA 7256 || ||||| ||||| ||||| || || | |||||| | ||||| || ||||| Sbjct 83862 GACTGGGGACACGCACGCGACTACGTGGAGGGTATGTGGATGATGCTGCAGCAAGACACC 83921 Query 7257 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7291 ||||||| | ||| | || ||||| || ||||| Sbjct 83922 CCCGACGACTTTGTCCTCGCGACGGGCGAAACCCA 83956 >seq84 Length=1022938 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 295748 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 295689 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| |||||| |||||||||| | || | || || Sbjct 295688 CGAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAATTGTACGCCTTCTG 295629 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 295628 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 295569 Query 7079 CCATGAATCACC 7090 ||| || || || Sbjct 295568 CCACGAGTCCCC 295557 >seq73 Length=1807266 Score = 93.3 bits (102), Expect = 5e-14 Identities = 202/296 (68%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| |||||||||||||| || ||||| | ||| ||| | ||| ||||| || || Sbjct 1175199 GATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCC 1175258 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || ||| |||| || || || ||||||||||||| ||| Sbjct 1175259 GTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTT 1175318 Query 169298 GAGATCG-TTGAACTCTTGG-TTTGATGTGA---GCTGTGCCACTGAAGCGTCGCGGACA 169352 ||||| ||||| ||| || ||| | || ||| ||| | | || || || || Sbjct 1175319 --GATCGCTTGAA-TCTCGGCATTGTCGAGAAGGGCTTTGC--CCGCCGCTTCACGTACG 1175373 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 || |||| || || | ||| ||||| ||||||| || || || ||||| | ||| Sbjct 1175374 TTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCCAGA 1175433 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT 169468 |||| ||| ||||| | || || ||||| || || || | ||||| || ||||| Sbjct 1175434 CCCGAGACGGCAAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTT 1175489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979649537440